MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-29-P2d1

Family name MIR-29 (all species)
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-29-P1b1-v1  Mal-Mir-29-P1b2-v1  Mal-Mir-29-P1d1  Mal-Mir-29-P1d2-v1  Mal-Mir-29-P2b1-v1  Mal-Mir-29-P2d2 
Orthologues Aca-Mir-29-P2d  Agr-Mir-29-P2  Ami-Mir-29-P2d  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cja-Mir-29-P2d  Cli-Mir-29-P2d  Cmi-Mir-29-P2d  Cpi-Mir-29-P2d  Cpo-Mir-29-P2d  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dno-Mir-29-P2d  Dpu-Mir-29-P2  Eba-Mir-29-P2  Esc-Mir-29-P2  Ete-Mir-29-P2d  Gga-Mir-29-P2d  Gja-Mir-29-P2d  Gmo-Mir-29-P2d1  Gsp-Mir-29  Hru-Mir-29-P2  Hsa-Mir-29-P2d  Laf-Mir-29-P2d  Lch-Mir-29-P2d  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Loc-Mir-29-P2d-v1  Mdo-Mir-29-P2d  Mgi-Mir-29-P2  Mml-Mir-29-P2d  Mmr-Mir-29-P2d  Mmu-Mir-29-P2d  Mom-Mir-29-P2  Mun-Mir-29-P2d  Neu-Mir-29-P2d  Npo-Mir-29-P2  Oan-Mir-29-P2d  Obi-Mir-29-P2  Ocu-Mir-29-P2d  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pab-Mir-29-P2d  Pau-Mir-29-P2  Pbv-Mir-29-P2d  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rph-Mir-29-P2  Sha-Mir-29-P2d  Sko-Mir-29-P2  Sme-Mir-29-o2  Spt-Mir-29-P2d  Spu-Mir-29-P2  Sto-Mir-29-P2d  Tgu-Mir-29-P2d  Tni-Mir-29-P2d1  War-Mir-29-P2  Xbo-Mir-29-P2  Xtr-Mir-29-P2d 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884689.1: 5190877-5190935 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2d1)		 Mir-29-P2d1 KV884689.1: 5190877-5190935 [-] UCSC Ensembl
Mir-29-P1d1 KV884689.1: 5191159-5191220 [-] UCSC Ensembl
Seed AGCACCA
Precursor
(pre-Mir +30nt flank)		 
UGACCACCCGACCUCCUCUCACCAAGGCUGACCGUUUUCCUCUGGUGUUCAGAGUUUCCAUCAUGUCUAGCACCAUUUGAAAUCGGUUACAAUGUUGAGGGACUGUCAACAAAGAUUUU
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Structure
        10           20        30        40        50         
UGACCACCCGACCUCCU---|   C  AGGC      U    CUC       C   GUUUC 
                    CUCA CA    UGACCG UUUC   UGGUGUU AGA     C
                    GAGU GU    AUUGGC AAAG   ACCACGA UCU     A
UUUUAGAAACAACUGUCAGG^   U  AAC-      U    UUU       -   GUACU 
       110       100        90         80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-29-P2d1_5p*
mirBase accessionNone
Sequence 
0- ACCGUUUUCCUCUGGUGUUCAGA -23
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Mature sequence

Mal-Mir-29-P2d1_3p
mirBase accessionNone
Sequence 
37- UAGCACCAUUUGAAAUCGGUUA -59
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