MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-29-P1b1

Family name MIR-29 (all species)
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-29-P1b2-v1  Mal-Mir-29-P1d1  Mal-Mir-29-P1d2-v1  Mal-Mir-29-P2b1-v1  Mal-Mir-29-P2d1  Mal-Mir-29-P2d2 
Orthologues Aae-Mir-29-P1  Aca-Mir-29-P1b-v1  Aga-Mir-29-P1  Agr-Mir-29-P1  Ami-Mir-29-P1b-v1  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bla-Mir-29-P1  Bta-Mir-29-P1b-v1  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cfa-Mir-29-P1b-v1  Cin-Mir-29-o1  Cja-Mir-29-P1b-v1  Cli-Mir-29-P1b-v1  Cmi-Mir-29-P1b  Cpi-Mir-29-P1b-v1  Cpo-Mir-29-P1b-v1  Csc-Mir-29-P1  Cte-Mir-29-P1  Dan-Mir-29-P1  Dgr-Mir-29-P1  Dlo-Mir-29-P1  Dma-Mir-29-P1  Dme-Mir-29-P1  Dmo-Mir-29-P1  Dno-Mir-29-P1b-v1  Dpu-Mir-29-P1  Dre-Mir-29-P1b1  Dsi-Mir-29-P1  Dya-Mir-29-P1  Eba-Mir-29-P1  Eca-Mir-29-P1b-v1  Esc-Mir-29-P1  Ete-Mir-29-P1b-v1  Gga-Mir-29-P1b-v1  Gja-Mir-29-P1b-v1  Gmo-Mir-29-P1b1  Gpa-Mir-29-P1  Gsp-Mir-29  Hme-Mir-29-P1  Hru-Mir-29-P1  Hsa-Mir-29-P1b-v1  Isc-Mir-29-P1  Laf-Mir-29-P1b-v1  Lch-Mir-29-P1b  Lhy-Mir-29-P1  Llo-Mir-29-P1  Loc-Mir-29-P1b-v1  Mdo-Mir-29-P1b-v1  Mgi-Mir-29-P1  Mml-Mir-29-P1b-v1  Mmr-Mir-29-P1b-v1  Mmu-Mir-29-P1b-v1  Mom-Mir-29-P1  Mun-Mir-29-P1b  Neu-Mir-29-P1b-v1  Npo-Mir-29-P1  Oan-Mir-29-P1b-v1  Obi-Mir-29-P1  Ocu-Mir-29-P1b-v1  Ofu-Mir-29-P1  Ovu-Mir-29-P1  Pab-Mir-29-P1b-v1  Pau-Mir-29-P1  Pbv-Mir-29-P1b-v1  Pcr-Mir-29-P1  Pdu-Mir-29-P1  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Pve-Mir-29-P1  Rno-Mir-29-P1b-v1  Rph-Mir-29-P1  Sha-Mir-29-P1b-v1  Sko-Mir-29-P1  Snu-Mir-29-P1  Spt-Mir-29-P1b  Spu-Mir-29-P1  Sto-Mir-29-P1b  Tca-Mir-29-P1  Tgu-Mir-29-P1b-v1  Tni-Mir-29-P1b1  Tur-Mir-29-P1  War-Mir-29-P1  Xbo-Mir-29-P1  Xtr-Mir-29-P1b-v1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884739.1: 6343654-6343716 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P1b1-v1)		 Mir-29-P2b1-v1 KV884739.1: 6343485-6343545 [-] UCSC Ensembl
Mir-29-P2b1-v2 KV884739.1: 6343485-6343545 [-] UCSC Ensembl
Mir-29-P1b1-v1 KV884739.1: 6343654-6343716 [-] UCSC Ensembl
Mir-29-P1b1-v2 KV884739.1: 6343654-6343716 [-] UCSC Ensembl
Variant

Mal-Mir-29-P1b1-v1
Seed AGCACCA
Precursor
(pre-Mir +30nt flank)		 
GCCUGACACCAAAACAUCUUCCCCAAGAAGCUGGUUUCACGUGGUGGUUUAGAUGUGUGUUCCUGUUGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGGGAGAGGAGGACAGCUCCAGCAGUG
Get precursor sequence
Structure
        10           20         30        40        50        60 
GCCUGACACCAAAACAUC---           -|         C      GU     UGUGUGU 
                     UUCCCCAAGAA GCUGGUUUCA GUGGUG  UUAGA       \
                     GAGGGGUUCUU UGACUAAAGU UACCAC  GAUCU       U
GUGACGACCUCGACAGGAGGA           G^         U      --     GUUGUCC 
 120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-29-P1b1-v1_5p*
mirBase accessionNone
Sequence 
0- CUGGUUUCACGUGGUGGUUUAGA -23
Get sequence
Mature sequence

Mal-Mir-29-P1b1-v1_3p
mirBase accessionNone
Sequence 
40- UAGCACCAUUUGAAAUCAGUGUU -63
Get sequence
Variant

Mal-Mir-29-P1b1-v2
Seed UAGCACC
Precursor
(pre-Mir +30nt flank)		 
GCCUGACACCAAAACAUCUUCCCCAAGAAGCUGGUUUCACGUGGUGGUUUAGAUGUGUGUUCCUGUUGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGGGAGAGGAGGACAGCUCCAGCAGUG
Get precursor sequence
Structure
        10           20         30        40        50        60 
GCCUGACACCAAAACAUC---           -|         C      GU     UGUGUGU 
                     UUCCCCAAGAA GCUGGUUUCA GUGGUG  UUAGA       \
                     GAGGGGUUCUU UGACUAAAGU UACCAC  GAUCU       U
GUGACGACCUCGACAGGAGGA           G^         U      --     GUUGUCC 
 120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-29-P1b1-v2_5p*
mirBase accessionNone
Sequence 
0- CUGGUUUCACGUGGUGGUUUAGA -23
Get sequence
Mature sequence

Mal-Mir-29-P1b1-v2_3p
mirBase accessionNone
Sequence 
39- CUAGCACCAUUUGAAAUCAGUGUU -63
Get sequence