Mir-29-P1b-v1

MirGeneDB ID

Cpi-Mir-29-P1b

Family name

MIR-29 (all species)

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-29b-1

Paralogues

Cpi-Mir-29-P1d-v1 Cpi-Mir-29-P2b Cpi-Mir-29-P2d

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1b-v1 Aga-Mir-29-P1 Agr-Mir-29-P1 Ami-Mir-29-P1b-v1 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Bta-Mir-29-P1b-v1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1b-v1 Cin-Mir-29-o1 Cja-Mir-29-P1b-v1 Cli-Mir-29-P1b-v1 Cmi-Mir-29-P1b Cpo-Mir-29-P1b-v1 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1b-v1 Dpu-Mir-29-P1 Dre-Mir-29-P1b1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Eca-Mir-29-P1b-v1 Esc-Mir-29-P1 Ete-Mir-29-P1b-v1 Gga-Mir-29-P1b-v1 Gja-Mir-29-P1b-v1 Gmo-Mir-29-P1b1 Gmo-Mir-29-P1b2 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Hsa-Mir-29-P1b-v1 Isc-Mir-29-P1 Laf-Mir-29-P1b-v1 Lch-Mir-29-P1b Lhy-Mir-29-P1 Llo-Mir-29-P1 Loc-Mir-29-P1b-v1 Mal-Mir-29-P1b1-v1 Mal-Mir-29-P1b2-v1 Mdo-Mir-29-P1b-v1 Mgi-Mir-29-P1 Mml-Mir-29-P1b-v1 Mmr-Mir-29-P1b-v1 Mmu-Mir-29-P1b-v1 Mom-Mir-29-P1 Mun-Mir-29-P1b Neu-Mir-29-P1b-v1 Npo-Mir-29-P1 Oan-Mir-29-P1b-v1 Obi-Mir-29-P1 Ocu-Mir-29-P1b-v1 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pab-Mir-29-P1b-v1 Pau-Mir-29-P1 Pbv-Mir-29-P1b-v1 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rno-Mir-29-P1b-v1 Rph-Mir-29-P1 Sha-Mir-29-P1b-v1 Sko-Mir-29-P1 Snu-Mir-29-P1 Spt-Mir-29-P1b Spu-Mir-29-P1 Sto-Mir-29-P1b Tca-Mir-29-P1 Tgu-Mir-29-P1b-v1 Tni-Mir-29-P1b1 Tni-Mir-29-P1b2 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1 Xla-Mir-29-P1b3 Xla-Mir-29-P1b4 Xtr-Mir-29-P1b-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(chrPic1)

JH584592: 6714640-6714703 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P1b-v1)

Mir-29-P2b JH584592: 6713467-6713526 [-] UCSC Ensembl
Mir-29-P1b-v1 JH584592: 6714640-6714703 [-] UCSC Ensembl
Mir-29-P1b-v2 JH584592: 6714641-6714702 [-] UCSC Ensembl

Variant

Cpi-Mir-29-P1b-v1

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

GAUGAAAACUCUCUGAAGCUCCCUCAGGAAGCUGGUUUCAUAUGGUGGUUUAGAUUUAACUACUCCGUGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGAGGAAGAAUGGCUGCCCUUCCAUCA

Get precursor sequence

Structure

        10          20        30         40        50        60  
GAUGAAAACUCUCUGAAGC--   CU      -|         U      GU     UUUAACU 
                     UCC  CAGGAA GCUGGUUUCA AUGGUG  UUAGA       \
                     AGG  GUUCUU UGACUAAAGU UACCAC  GAUCU       A
ACUACCUUCCCGUCGGUAAGA   AG      G^         U      --     GUGCCUC 
  120       110       100        90        80          70

Deep sequencing

Go to detailed chart

Comment

Based on the 3' offset reads it appears that the 3p read is monouridylated.

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Te	Te	Te	To

Star sequence

Cpi-Mir-29-P1b-v1_5p*

mirBase accession

MIMAT0037671

Sequence

0- GCUGGUUUCAUAUGGUGGUUUAGA -24

Get sequence

Mature sequence

Cpi-Mir-29-P1b-v1_3p

mirBase accession

MIMAT0037672

Sequence

41- UAGCACCAUUUGAAAUCAGUGUU -64

Get sequence

Variant

Cpi-Mir-29-P1b-v2

Seed

UAGCACC

Precursor
(pre-Mir +30nt flank)

AUGAAAACUCUCUGAAGCUCCCUCAGGAAGCUGGUUUCAUAUGGUGGUUUAGAUUUAACUACUCCGUGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGAGGAAGAAUGGCUGCCCUUCCAUC

Get precursor sequence

Structure

        10          20         30        40        50        60 
AUGAAAACUCUCUGAAGC--   CU      -|         U      GU      UUAACU 
                    UCC  CAGGAA GCUGGUUUCA AUGGUG  UUAGAU      \
                    AGG  GUUCUU UGACUAAAGU UACCAC  GAUCUG      A
CUACCUUCCCGUCGGUAAGA   AG      G^         U      --      UGCCUC 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Te	Te	Te	To

Star sequence

Cpi-Mir-29-P1b-v2_5p*

mirBase accession

MIMAT0037671

Sequence

0- CUGGUUUCAUAUGGUGGUUUAGAU -24

Get sequence

Mature sequence

Cpi-Mir-29-P1b-v2_3p

mirBase accession

MIMAT0037672

Sequence

39- CUAGCACCAUUUGAAAUCAGUGU -62

Get sequence