MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-29-P1b2

Family name MIR-29 (all species)
Seed UGAUUUC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-29-P1b1  Tni-Mir-29-P1d1  Tni-Mir-29-P1d2  Tni-Mir-29-P2b1  Tni-Mir-29-P2d1  Tni-Mir-29-P2d2 
Orthologues Aae-Mir-29-P1  Aca-Mir-29-P1b-v1  Aca-Mir-29-P1b-v2  Ami-Mir-29-P1b-v1  Ami-Mir-29-P1b-v2  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bla-Mir-29-P1  Bta-Mir-29-P1b-v1  Bta-Mir-29-P1b-v2  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cfa-Mir-29-P1b-v1  Cfa-Mir-29-P1b-v2  Cgi-Mir-29-P1  Cli-Mir-29-P1b-v1  Cli-Mir-29-P1b-v2  Cmi-Mir-29-P1b  Cpi-Mir-29-P1b-v1  Cpi-Mir-29-P1b-v2  Cpo-Mir-29-P1b-v1  Cpo-Mir-29-P1b-v2  Cte-Mir-29-P1  Dan-Mir-29-P1  Dme-Mir-29-P1  Dmo-Mir-29-P1  Dno-Mir-29-P1b-v1  Dno-Mir-29-P1b-v2  Dsi-Mir-29-P1  Dya-Mir-29-P1  Esc-Mir-29-P1  Ete-Mir-29-P1b-v1  Ete-Mir-29-P1b-v2  Gga-Mir-29-P1b-v1  Gga-Mir-29-P1b-v2  Gja-Mir-29-P1b-v1  Gja-Mir-29-P1b-v2  Gmo-Mir-29-P1b2  Hme-Mir-29-P1  Hsa-Mir-29-P1b-v1  Hsa-Mir-29-P1b-v2  Lch-Mir-29-P1b  Loc-Mir-29-P1b-v1  Loc-Mir-29-P1b-v2  Mal-Mir-29-P1b2-v1  Mal-Mir-29-P1b2-v2  Mdo-Mir-29-P1b-v1  Mdo-Mir-29-P1b-v2  Mml-Mir-29-P1b-v1  Mml-Mir-29-P1b-v2  Mmu-Mir-29-P1b-v1  Mmu-Mir-29-P1b-v2  Mun-Mir-29-P1b  Npo-Mir-29-P1  Oan-Mir-29-P1b-v1  Oan-Mir-29-P1b-v2  Obi-Mir-29-P1  Ocu-Mir-29-P1b-v1  Ocu-Mir-29-P1b-v2  Ovu-Mir-29-P1  Pbv-Mir-29-P1b-v1  Pbv-Mir-29-P1b-v2  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Rno-Mir-29-P1b-v1  Rno-Mir-29-P1b-v2  Sha-Mir-29-P1b-v1  Sha-Mir-29-P1b-v2  Sko-Mir-29-P1  Spt-Mir-29-P1b  Spu-Mir-29-P1  Sto-Mir-29-P1b  Tca-Mir-29-P1  Tgu-Mir-29-P1b-v1  Tgu-Mir-29-P1b-v2  Xbo-Mir-29-P1  Xtr-Mir-29-P1b-v1  Xtr-Mir-29-P1b-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
13: 10251338-10251399 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCGAAUGGAUGUUUUGCUGCACUCAGAAGCUGAUUUCAUCUGGUGACGUAGAUGUUUGUACCGAGUCUCUAGCACCAUAUGAAAUCAGUGUUUUGGGGGUGGACUCUCAGCAUGUACAGGU
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Structure
        10          20         30        40        50        60 
GGCGAAUGGAUGUUUUG-- UG A       -|          C     ACG    UGUUUGU 
                   C  C CUCAGAA GCUGAUUUCAU UGGUG   UAGA       \
                   G  G GGGUUUU UGACUAAAGUA ACCAC   AUCU       A
UGGACAUGUACGACUCUCA GU G       G^          U     G--    CUGAGCC 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-29-P1b2_5p

mirBase accessionNone
Sequence
0- CUGAUUUCAUCUGGUGACGUAGA -23
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Co-mature sequence

Tni-Mir-29-P1b2_3p

mirBase accessionNone
Sequence
40- UAGCACCAUAUGAAAUCAGUGU -62
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