Mir-29-P1b

MirGeneDB ID

Sto-Mir-29-P1b

Family name

MIR-29 (all species)

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-29-P1d Sto-Mir-29-P2b Sto-Mir-29-P2d

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1b-v1 Aga-Mir-29-P1 Agr-Mir-29-P1 Ami-Mir-29-P1b-v1 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Bta-Mir-29-P1b-v1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1b-v1 Cin-Mir-29-o1 Cja-Mir-29-P1b-v1 Cli-Mir-29-P1b-v1 Cmi-Mir-29-P1b Cpi-Mir-29-P1b-v1 Cpo-Mir-29-P1b-v1 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1b-v1 Dpu-Mir-29-P1 Dre-Mir-29-P1b1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Eca-Mir-29-P1b-v1 Esc-Mir-29-P1 Ete-Mir-29-P1b-v1 Gga-Mir-29-P1b-v1 Gja-Mir-29-P1b-v1 Gmo-Mir-29-P1b1 Gmo-Mir-29-P1b2 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Hsa-Mir-29-P1b-v1 Isc-Mir-29-P1 Laf-Mir-29-P1b-v1 Lch-Mir-29-P1b Lhy-Mir-29-P1 Llo-Mir-29-P1 Loc-Mir-29-P1b-v1 Mal-Mir-29-P1b1-v1 Mal-Mir-29-P1b2-v1 Mdo-Mir-29-P1b-v1 Mgi-Mir-29-P1 Mml-Mir-29-P1b-v1 Mmr-Mir-29-P1b-v1 Mmu-Mir-29-P1b-v1 Mom-Mir-29-P1 Mun-Mir-29-P1b Neu-Mir-29-P1b-v1 Npo-Mir-29-P1 Oan-Mir-29-P1b-v1 Obi-Mir-29-P1 Ocu-Mir-29-P1b-v1 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pab-Mir-29-P1b-v1 Pau-Mir-29-P1 Pbv-Mir-29-P1b-v1 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rno-Mir-29-P1b-v1 Rph-Mir-29-P1 Sha-Mir-29-P1b-v1 Sko-Mir-29-P1 Snu-Mir-29-P1 Spt-Mir-29-P1b Spu-Mir-29-P1 Tca-Mir-29-P1 Tgu-Mir-29-P1b-v1 Tni-Mir-29-P1b1 Tni-Mir-29-P1b2 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1 Xla-Mir-29-P1b3 Xla-Mir-29-P1b4 Xtr-Mir-29-P1b-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_003427355_STO_add)

BFAA01004289.1: 36703-36764 [-]

Clustered miRNAs
(< 50kb from Mir-29-P1b)

Mir-29-P2b BFAA01004289.1: 34563-34622 [-]
Mir-29-P1b BFAA01004289.1: 36703-36764 [-]

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

UGAAGAAGGCGGUGUAACUUCUCCAGGAGCCUGGUUCCAUAUGGUGGUUUAGAUUUAACUGAGCUGUGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGAGAAAGGCUCGCAUCACAACUCUC

Get precursor sequence

Structure

        10          20        30         40        50        60 
UGAAGAAGGCGGUGUAAC--            -|     C  U      GU     UUUAACU 
                    UUCUCCAGGAGC CUGGUU CA AUGGUG  UUAGA       \
                    AAGAGGUUCUUG GACUAA GU UACCAC  GAUCU       G
CUCUCAACACUACGCUCGGA            U^     A  U      --     GUGUCGA 
120       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Sto-Mir-29-P1b_5p*

mirBase accession

None

Sequence

0- CUGGUUCCAUAUGGUGGUUUAGA -23

Get sequence

Mature sequence

Sto-Mir-29-P1b_3p

mirBase accession

None

Sequence

40- UAGCACCAUUUGAAAUCAGUGU -62

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