Mir-29-P1b-v1

MirGeneDB ID

Pab-Mir-29-P1b

Family name

MIR-29 (all species)

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-29-P1d-v1 Pab-Mir-29-P2b Pab-Mir-29-P2d

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1b-v1 Aga-Mir-29-P1 Agr-Mir-29-P1 Ami-Mir-29-P1b-v1 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Bta-Mir-29-P1b-v1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1b-v1 Cin-Mir-29-o1 Cja-Mir-29-P1b-v1 Cli-Mir-29-P1b-v1 Cmi-Mir-29-P1b Cpi-Mir-29-P1b-v1 Cpo-Mir-29-P1b-v1 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1b-v1 Dpu-Mir-29-P1 Dre-Mir-29-P1b1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Eca-Mir-29-P1b-v1 Esc-Mir-29-P1 Ete-Mir-29-P1b-v1 Gga-Mir-29-P1b-v1 Gja-Mir-29-P1b-v1 Gmo-Mir-29-P1b1 Gmo-Mir-29-P1b2 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Hsa-Mir-29-P1b-v1 Isc-Mir-29-P1 Laf-Mir-29-P1b-v1 Lch-Mir-29-P1b Lhy-Mir-29-P1 Llo-Mir-29-P1 Loc-Mir-29-P1b-v1 Mal-Mir-29-P1b1-v1 Mal-Mir-29-P1b2-v1 Mdo-Mir-29-P1b-v1 Mgi-Mir-29-P1 Mml-Mir-29-P1b-v1 Mmr-Mir-29-P1b-v1 Mmu-Mir-29-P1b-v1 Mom-Mir-29-P1 Mun-Mir-29-P1b Neu-Mir-29-P1b-v1 Npo-Mir-29-P1 Oan-Mir-29-P1b-v1 Obi-Mir-29-P1 Ocu-Mir-29-P1b-v1 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pau-Mir-29-P1 Pbv-Mir-29-P1b-v1 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rno-Mir-29-P1b-v1 Rph-Mir-29-P1 Sha-Mir-29-P1b-v1 Sko-Mir-29-P1 Snu-Mir-29-P1 Spt-Mir-29-P1b Spu-Mir-29-P1 Sto-Mir-29-P1b Tca-Mir-29-P1 Tgu-Mir-29-P1b-v1 Tni-Mir-29-P1b1 Tni-Mir-29-P1b2 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1 Xla-Mir-29-P1b3 Xla-Mir-29-P1b4 Xtr-Mir-29-P1b-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054685.2: 128195776-128195839 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P1b-v1)

Mir-29-P2b CM054685.2: 128195059-128195118 [-] UCSC Ensembl
Mir-29-P1b-v1 CM054685.2: 128195776-128195839 [-] UCSC Ensembl
Mir-29-P1b-v2 CM054685.2: 128195777-128195838 [-] UCSC Ensembl

Variant

Pab-Mir-29-P1b-v1

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

AAAAAAUAGAUCAUAAAGCUUCUUCAGGAAGCUGGUUUCAUAUGGUGGUUUAGAUUUAAAUAGUGAUUGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGGGGAGACCAGCUGCGCUGCACUGCC

Get precursor sequence

Structure

        10          20        30         40        50        60  
AAAAAAUAGAUCAUAAAG--            -|         U      GU     UUUAAAU 
                    CUUCUUCAGGAA GCUGGUUUCA AUGGUG  UUAGA       \
                    GAGGGGGUUCUU UGACUAAAGU UACCAC  GAUCU       A
CCGUCACGUCGCGUCGACCA            G^         U      --     GUUAGUG 
  120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Star sequence

Pab-Mir-29-P1b-v1_5p* (predicted)

mirBase accession

None

Sequence

0- GCUGGUUUCAUAUGGUGGUUUAGA -24

Get sequence

Mature sequence

Pab-Mir-29-P1b-v1_3p

mirBase accession

None

Sequence

41- UAGCACCAUUUGAAAUCAGUGUU -64

Get sequence

Variant

Pab-Mir-29-P1b-v2

Seed

UAGCACC

Precursor
(pre-Mir +30nt flank)

AAAAAUAGAUCAUAAAGCUUCUUCAGGAAGCUGGUUUCAUAUGGUGGUUUAGAUUUAAAUAGUGAUUGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGGGGAGACCAGCUGCGCUGCACUGC

Get precursor sequence

Structure

        10          20         30        40        50        60 
AAAAAUAGAUCAUAAAG--            -|         U      GU      UUAAAU 
                   CUUCUUCAGGAA GCUGGUUUCA AUGGUG  UUAGAU      \
                   GAGGGGGUUCUU UGACUAAAGU UACCAC  GAUCUG      A
CGUCACGUCGCGUCGACCA            G^         U      --      UUAGUG 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Star sequence

Pab-Mir-29-P1b-v2_5p* (predicted)

mirBase accession

None

Sequence

0- CUGGUUUCAUAUGGUGGUUUAGAU -24

Get sequence

Mature sequence

Pab-Mir-29-P1b-v2_3p

mirBase accession

None

Sequence

39- CUAGCACCAUUUGAAAUCAGUGU -62

Get sequence