Mir-29-P1b1

MirGeneDB ID

Tni-Mir-29-P1b1

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-29b-1

Paralogues

Tni-Mir-29-P1b2 Tni-Mir-29-P1d1 Tni-Mir-29-P1d2 Tni-Mir-29-P2b1 Tni-Mir-29-P2d1 Tni-Mir-29-P2d2

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1b-v1 Aca-Mir-29-P1b-v2 Ami-Mir-29-P1b-v1 Ami-Mir-29-P1b-v2 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Bta-Mir-29-P1b-v1 Bta-Mir-29-P1b-v2 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1b-v1 Cfa-Mir-29-P1b-v2 Cgi-Mir-29-P1 Cli-Mir-29-P1b-v1 Cli-Mir-29-P1b-v2 Cmi-Mir-29-P1b Cpi-Mir-29-P1b-v1 Cpi-Mir-29-P1b-v2 Cpo-Mir-29-P1b-v1 Cpo-Mir-29-P1b-v2 Cte-Mir-29-P1 Dan-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1b-v1 Dno-Mir-29-P1b-v2 Dre-Mir-29-P1b1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Esc-Mir-29-P1 Ete-Mir-29-P1b-v1 Ete-Mir-29-P1b-v2 Gga-Mir-29-P1b-v1 Gga-Mir-29-P1b-v2 Gja-Mir-29-P1b-v1 Gja-Mir-29-P1b-v2 Gmo-Mir-29-P1b1 Hme-Mir-29-P1 Hsa-Mir-29-P1b-v1 Hsa-Mir-29-P1b-v2 Lch-Mir-29-P1b Loc-Mir-29-P1b-v1 Loc-Mir-29-P1b-v2 Mal-Mir-29-P1b1-v1 Mal-Mir-29-P1b1-v2 Mdo-Mir-29-P1b-v1 Mdo-Mir-29-P1b-v2 Mml-Mir-29-P1b-v1 Mml-Mir-29-P1b-v2 Mmu-Mir-29-P1b-v1 Mmu-Mir-29-P1b-v2 Mun-Mir-29-P1b Npo-Mir-29-P1 Oan-Mir-29-P1b-v1 Oan-Mir-29-P1b-v2 Obi-Mir-29-P1 Ocu-Mir-29-P1b-v1 Ocu-Mir-29-P1b-v2 Ovu-Mir-29-P1 Pbv-Mir-29-P1b-v1 Pbv-Mir-29-P1b-v2 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Rno-Mir-29-P1b-v1 Rno-Mir-29-P1b-v2 Sha-Mir-29-P1b-v1 Sha-Mir-29-P1b-v2 Sko-Mir-29-P1 Spt-Mir-29-P1b Spu-Mir-29-P1 Sto-Mir-29-P1b Tca-Mir-29-P1 Tgu-Mir-29-P1b-v1 Tgu-Mir-29-P1b-v2 Xbo-Mir-29-P1 Xtr-Mir-29-P1b-v1 Xtr-Mir-29-P1b-v2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

Un_random: 8673333-8673394 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P1b1)

Mir-29-P1b1 Un_random: 8673333-8673394 [+] UCSC Ensembl
Mir-29-P2b1 Un_random: 8673485-8673545 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGAGAUCCUACAUGAACUUCCUCCAGAAGCUGGUUUCACGUGGUGGUUUAGAUGUGUCUCCUCAUCGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGGGACAGGAGGACUGCUCUGGGAGG

Get precursor sequence

Structure

        10          20         30        40        50        60 
GUGAGAUCCUACAUGAA-  -     C    -|         C      GU     UGUGUCU 
                  CU UCCUC AGAA GCUGGUUUCA GUGGUG  UUAGA       \
                  GA AGGGG UCUU UGACUAAAGU UACCAC  GAUCU       C
GGAGGGUCUCGUCAGGAG  C     U    G^         U      --     GCUACUC 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-29-P1b1_5p*

mirBase accession

None

Sequence

0- CUGGUUUCACGUGGUGGUUUAGA -23

Get sequence

Mature sequence

Tni-Mir-29-P1b1_3p

mirBase accession

MIMAT0003056

Sequence

40- UAGCACCAUUUGAAAUCAGUGU -62

Get sequence