Mir-29-P1d1

MirGeneDB ID

Tni-Mir-29-P1d1

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-29-P1b1 Tni-Mir-29-P1b2 Tni-Mir-29-P1d2 Tni-Mir-29-P2b1 Tni-Mir-29-P2d1 Tni-Mir-29-P2d2

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1d-v1 Aca-Mir-29-P1d-v2 Ami-Mir-29-P1d-v1 Ami-Mir-29-P1d-v2 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1d-v1 Cfa-Mir-29-P1d-v2 Cgi-Mir-29-P1 Cli-Mir-29-P1d-v1 Cli-Mir-29-P1d-v2 Cmi-Mir-29-P1d Cpi-Mir-29-P1d-v1 Cpi-Mir-29-P1d-v2 Cpo-Mir-29-P1d-v1 Cpo-Mir-29-P1d-v2 Cte-Mir-29-P1 Dan-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1d-v1 Dno-Mir-29-P1d-v2 Dre-Mir-29-P1d1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Esc-Mir-29-P1 Ete-Mir-29-P1d-v1 Ete-Mir-29-P1d-v2 Gga-Mir-29-P1d-v1 Gga-Mir-29-P1d-v2 Gja-Mir-29-P1d-v1 Gja-Mir-29-P1d-v2 Gmo-Mir-29-P1d1 Hme-Mir-29-P1 Hsa-Mir-29-P1d-v1 Hsa-Mir-29-P1d-v2 Lch-Mir-29-P1d Loc-Mir-29-P1d Mal-Mir-29-P1d1 Mdo-Mir-29-P1d-v1 Mdo-Mir-29-P1d-v2 Mml-Mir-29-P1d-v1 Mml-Mir-29-P1d-v2 Mmu-Mir-29-P1d-v1 Mmu-Mir-29-P1d-v2 Mun-Mir-29-P1d-v1 Mun-Mir-29-P1d-v2 Npo-Mir-29-P1 Oan-Mir-29-P1d-v1 Oan-Mir-29-P1d-v2 Obi-Mir-29-P1 Ocu-Mir-29-P1d-v1 Ocu-Mir-29-P1d-v2 Ovu-Mir-29-P1 Pbv-Mir-29-P1d-v1 Pbv-Mir-29-P1d-v2 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Sha-Mir-29-P1d-v1 Sha-Mir-29-P1d-v2 Sko-Mir-29-P1 Spt-Mir-29-P1d Spu-Mir-29-P1 Sto-Mir-29-P1d Tca-Mir-29-P1 Tgu-Mir-29-P1d-v1 Tgu-Mir-29-P1d-v2 Xbo-Mir-29-P1 Xtr-Mir-29-P1d

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

11: 8724044-8724104 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGAUUUUUGGGAAGUAUCCUCCCCAGGGAACUGAUUUCCCAUGGUGUUUUAGAGUAUAAAAUCUCAUCUAGCACCAUUUGAAAUCGGUGUUCUUGAGUAGGAAAGAAUGUCUGUACUCAC

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Structure

        10         20        30         40        50          
UUGAUUUUUGGGAAGUA-    CCC      -|        CC        UUAGAGUAUA 
                  UCCU   CAGGGA ACUGAUUUC  AUGGUGUU          \
                  AGGA   GUUCUU UGGCUAAAG  UACCACGA          A
CACUCAUGUCUGUAAGAA    UGA      G^        UU        UCUACUCUAA 
 .       110       100        90        80        70

Deep sequencing

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Comment

There is a second Drosha cut -1 on the 3p arm.

3' NTU

Motifs

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-29-P1d1_5p*

mirBase accession

None

Sequence

0- ACUGAUUUCCCAUGGUGUUUUA -22

Get sequence

Mature sequence

Tni-Mir-29-P1d1_3p

mirBase accession

None

Sequence

39- UAGCACCAUUUGAAAUCGGUGU -61

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