Mir-29-P1d

MirGeneDB ID

Loc-Mir-29-P1d

Family name

MIR-29 (all species)

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-29-P1b-v1 Loc-Mir-29-P2a Loc-Mir-29-P2b Loc-Mir-29-P2d-v1

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1d-v1 Aga-Mir-29-P1 Agr-Mir-29-P1 Ami-Mir-29-P1d-v1 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Bta-Mir-29-P1d7-v1 Bta-Mir-29-P1d8-v1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1d-v1 Cin-Mir-29-o1 Cja-Mir-29-P1d-v1 Cli-Mir-29-P1d-v1 Cmi-Mir-29-P1d Cpi-Mir-29-P1d-v1 Cpo-Mir-29-P1d-v1 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1d-v1 Dpu-Mir-29-P1 Dre-Mir-29-P1d1 Dre-Mir-29-P1d2 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Eca-Mir-29-P1d-v1 Esc-Mir-29-P1 Ete-Mir-29-P1d-v1 Gga-Mir-29-P1d-v1 Gja-Mir-29-P1d-v1 Gmo-Mir-29-P1d1 Gmo-Mir-29-P1d2 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Hsa-Mir-29-P1d-v1 Isc-Mir-29-P1 Laf-Mir-29-P1d-v1 Lch-Mir-29-P1d Lhy-Mir-29-P1 Llo-Mir-29-P1 Mal-Mir-29-P1d1 Mal-Mir-29-P1d2-v1 Mdo-Mir-29-P1d-v1 Mgi-Mir-29-P1 Mml-Mir-29-P1d-v1 Mmr-Mir-29-P1d-v1 Mmu-Mir-29-P1d-v1 Mom-Mir-29-P1 Mun-Mir-29-P1d-v1 Npo-Mir-29-P1 Oan-Mir-29-P1d-v1 Obi-Mir-29-P1 Ocu-Mir-29-P1d-v1 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pab-Mir-29-P1d-v1 Pau-Mir-29-P1 Pbv-Mir-29-P1d-v1 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rno-Mir-29-P1d5-v1 Rno-Mir-29-P1d6-v1 Rph-Mir-29-P1 Sha-Mir-29-P1d-v1 Sko-Mir-29-P1 Snu-Mir-29-P1 Spt-Mir-29-P1d Spu-Mir-29-P1 Sto-Mir-29-P1d Tca-Mir-29-P1 Tgu-Mir-29-P1d-v1 Tni-Mir-29-P1d1 Tni-Mir-29-P1d2 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1 Xla-Mir-29-P1d3 Xla-Mir-29-P1d4 Xtr-Mir-29-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG3: 30969161-30969226 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P1d)

Mir-29-P1d LG3: 30969161-30969226 [+] Ensembl
Mir-29-P2d-v1 LG3: 30969985-30970044 [+] Ensembl
Mir-29-P2d-v2 LG3: 30969986-30970043 [+] Ensembl

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

GGGAGAAGGGGCUUGGGUCUUCUCCUGGAAGCUGGUUUCAGGUGGUGGCUUAGAGUGCUUCAUGUUUUUCAUCUAGCACCAUUUGAAAUCAGUGUUCUUGGAGCAAGAGAGACAUCGCCAGCCAGC

Get precursor sequence

Structure

        10         20         30         40        50        60   
GGGAGAAGGGGCUUGGG-    -    U    -|                G  U   GUGCUUCA 
                  UCUU CUCC GGAA GCUGGUUUCAGGUGGUG CU AGA        \
                  AGAA GAGG UCUU UGACUAAAGUUUACCAC GA UCU        U
CGACCGACCGCUACAGAG    C    U    G^                -  -   ACUUUUUG 
    120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-29-P1d_5p*

mirBase accession

None

Sequence

0- GCUGGUUUCAGGUGGUGGCUUAGA -24

Get sequence

Mature sequence

Loc-Mir-29-P1d_3p

mirBase accession

None

Sequence

43- UAGCACCAUUUGAAAUCAGUGUU -66

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