Mir-29-P1d2

MirGeneDB ID

Gmo-Mir-29-P1d2

Family name

MIR-29 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-29b-1

Paralogues

Gmo-Mir-29-P1b1 Gmo-Mir-29-P1b2 Gmo-Mir-29-P1d1 Gmo-Mir-29-P2b1 Gmo-Mir-29-P2d1 Gmo-Mir-29-P2d2

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1d-v1 Aga-Mir-29-P1 Agr-Mir-29-P1 Ami-Mir-29-P1d-v1 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1d-v1 Cin-Mir-29-o1 Cja-Mir-29-P1d-v1 Cli-Mir-29-P1d-v1 Cmi-Mir-29-P1d Cpi-Mir-29-P1d-v1 Cpo-Mir-29-P1d-v1 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1d-v1 Dpu-Mir-29-P1 Dre-Mir-29-P1d2 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Eca-Mir-29-P1d-v1 Esc-Mir-29-P1 Ete-Mir-29-P1d-v1 Gga-Mir-29-P1d-v1 Gja-Mir-29-P1d-v1 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Hsa-Mir-29-P1d-v1 Isc-Mir-29-P1 Laf-Mir-29-P1d-v1 Lch-Mir-29-P1d Lhy-Mir-29-P1 Llo-Mir-29-P1 Loc-Mir-29-P1d Mal-Mir-29-P1d2-v1 Mdo-Mir-29-P1d-v1 Mgi-Mir-29-P1 Mml-Mir-29-P1d-v1 Mmr-Mir-29-P1d-v1 Mmu-Mir-29-P1d-v1 Mom-Mir-29-P1 Mun-Mir-29-P1d-v1 Npo-Mir-29-P1 Oan-Mir-29-P1d-v1 Obi-Mir-29-P1 Ocu-Mir-29-P1d-v1 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pab-Mir-29-P1d-v1 Pau-Mir-29-P1 Pbv-Mir-29-P1d-v1 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rph-Mir-29-P1 Sha-Mir-29-P1d-v1 Sko-Mir-29-P1 Snu-Mir-29-P1 Spt-Mir-29-P1d Spu-Mir-29-P1 Sto-Mir-29-P1d Tca-Mir-29-P1 Tgu-Mir-29-P1d-v1 Tni-Mir-29-P1d2 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1 Xtr-Mir-29-P1d

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

contig10139: 148-208 [-] UCSC Ensembl

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

AACCGACCCUCAGAAAUACUCCCCUUGGAAGCUGGUUUCCGAUGGUGGCUUAGAGUGCGGUCCUCCAUCUAGCACCAUUUGAAAUCAGUGUUCUUGUGGUGGGAUGUGAACUUCUCCCACA

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Structure

        10        20          30         40        50        60 
AACCGACCCUCAGAAAUAC   -  UU-    -|        C       G  U   GUGCGG 
                   UCC CC   GGAA GCUGGUUUC GAUGGUG CU AGA      \
                   GGG GG   UCUU UGACUAAAG UUACCAC GA UCU      U
ACACCCUCUUCAAGUGUA-   U  UGU    G^        U       -  -   ACCUCC 
 .       110        100        90        80          70

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Star sequence

Gmo-Mir-29-P1d2_5p*

mirBase accession

MIMAT0043999

Sequence

0- GCUGGUUUCCGAUGGUGGCUUAGA -24

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Mature sequence

Gmo-Mir-29-P1d2_3p

mirBase accession

MIMAT0044000

Sequence

39- UAGCACCAUUUGAAAUCAGUGU -61

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