Mir-29-P1

MirGeneDB ID

Mgi-Mir-29-P1

Family name

MIR-29 (all species)

Species

Pacific oyster (Magallana gigas)

MiRBase ID

Paralogues

Mgi-Mir-29-P2

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1b-v1 Aca-Mir-29-P1d-v1 Aga-Mir-29-P1 Agr-Mir-29-P1 Ami-Mir-29-P1b-v1 Ami-Mir-29-P1d-v1 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bge-Mir-29-P1k Bge-Mir-29-P1l Bla-Mir-29-P1 Bta-Mir-29-P1b-v1 Bta-Mir-29-P1d7-v1 Bta-Mir-29-P1d8-v1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1b-v1 Cfa-Mir-29-P1d-v1 Cin-Mir-29-o1 Cja-Mir-29-P1b-v1 Cja-Mir-29-P1d-v1 Cli-Mir-29-P1b-v1 Cli-Mir-29-P1d-v1 Cmi-Mir-29-P1b Cmi-Mir-29-P1d Cpi-Mir-29-P1b-v1 Cpi-Mir-29-P1d-v1 Cpo-Mir-29-P1b-v1 Cpo-Mir-29-P1d-v1 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1b-v1 Dno-Mir-29-P1d-v1 Dpu-Mir-29-P1 Dre-Mir-29-P1b1 Dre-Mir-29-P1d1 Dre-Mir-29-P1d2 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Ebu-Mir-29-P1e Ebu-Mir-29-P1f Eca-Mir-29-P1b-v1 Eca-Mir-29-P1d-v1 Efe-Mir-29-P1i Efe-Mir-29-P1j Esc-Mir-29-P1 Ete-Mir-29-P1b-v1 Ete-Mir-29-P1d-v1 Gga-Mir-29-P1b-v1 Gga-Mir-29-P1d-v1 Gja-Mir-29-P1b-v1 Gja-Mir-29-P1d-v1 Gmo-Mir-29-P1b1 Gmo-Mir-29-P1b2 Gmo-Mir-29-P1d1 Gmo-Mir-29-P1d2 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Hsa-Mir-29-P1b-v1 Hsa-Mir-29-P1d-v1 Isc-Mir-29-P1 Laf-Mir-29-P1b-v1 Laf-Mir-29-P1d-v1 Lan-Mir-29-P1g Lan-Mir-29-P1h Lch-Mir-29-P1b Lch-Mir-29-P1d Lhy-Mir-29-P1 Llo-Mir-29-P1 Loc-Mir-29-P1b-v1 Loc-Mir-29-P1d Lpo-Mir-29-P1m Lpo-Mir-29-P1n Mal-Mir-29-P1b1-v1 Mal-Mir-29-P1b2-v1 Mal-Mir-29-P1d1 Mal-Mir-29-P1d2-v1 Mdo-Mir-29-P1b-v1 Mdo-Mir-29-P1d-v1 Mml-Mir-29-P1b-v1 Mml-Mir-29-P1d-v1 Mmr-Mir-29-P1b-v1 Mmr-Mir-29-P1d-v1 Mmu-Mir-29-P1b-v1 Mmu-Mir-29-P1d-v1 Mom-Mir-29-P1 Mun-Mir-29-P1b Mun-Mir-29-P1d-v1 Neu-Mir-29-P1b-v1 Npo-Mir-29-P1 Oan-Mir-29-P1b-v1 Oan-Mir-29-P1d-v1 Obi-Mir-29-P1 Ocu-Mir-29-P1b-v1 Ocu-Mir-29-P1d-v1 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pab-Mir-29-P1b-v1 Pab-Mir-29-P1d-v1 Pau-Mir-29-P1 Pbv-Mir-29-P1b-v1 Pbv-Mir-29-P1d-v1 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pma-Mir-29-P1o1 Pma-Mir-29-P1o2 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rno-Mir-29-P1b-v1 Rno-Mir-29-P1d5-v1 Rno-Mir-29-P1d6-v1 Rph-Mir-29-P1 Sha-Mir-29-P1b-v1 Sha-Mir-29-P1d-v1 Sko-Mir-29-P1 Snu-Mir-29-P1 Spt-Mir-29-P1b Spt-Mir-29-P1d Spu-Mir-29-P1 Sro-Mir-29-P1p1 Sro-Mir-29-P1p2 Sto-Mir-29-P1b Sto-Mir-29-P1d Tca-Mir-29-P1 Tgu-Mir-29-P1b-v1 Tgu-Mir-29-P1d-v1 Tni-Mir-29-P1b1 Tni-Mir-29-P1b2 Tni-Mir-29-P1d1 Tni-Mir-29-P1d2 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1 Xla-Mir-29-P1b3 Xla-Mir-29-P1b4 Xla-Mir-29-P1d3 Xla-Mir-29-P1d4 Xtr-Mir-29-P1b-v1 Xtr-Mir-29-P1d

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(CGI_GCA_000297895.1)

scaffold145: 184799-184863 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P1)

Mir-29-P1 scaffold145: 184799-184863 [+] Ensembl
Mir-29-P2 scaffold145: 188912-188969 [+] Ensembl

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

UCCAUGGAAAUGAGAAUCUGCUGUAGGUCCCUGGUUUCAAGUGGUGAAUAGAUUUUGGAGUGAAAAUACUGUCUAGCACCAUUUGAAAUCAGUGCAUCUUUUAGUGGAAUGACAAAGCAUGGAUU

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Structure

        10         20         30         40        50        60  
UCCAUGGAAAUGAGAAU- UG   U-    CC-|               AA    UUUUGGAGU 
                  C  CUG  AGGU   CUGGUUUCAAGUGGUG  UAGA         \
                  G  GAU  UCUA   GACUAAAGUUUACCAC  AUCU         G
UUAGGUACGAAACAGUAA GU   UU    CGU^               G-    GUCAUAAAA 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

A-	D-	D-	F-	L-	Ea	Eg	Fe	Gi	Ha	He	Ju	La	Ma	Ma	Ma	Pe	Re	Sp	Um

Star sequence

Mgi-Mir-29-P1_5p*

mirBase accession

None

Sequence

0- CUGGUUUCAAGUGGUGAAUAGA -22

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Mature sequence

Mgi-Mir-29-P1_3p

mirBase accession

None

Sequence

43- UAGCACCAUUUGAAAUCAGUGC -65

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