Mir-29-P1k

MirGeneDB ID

Bge-Mir-29-P1k

Family name

MIR-29 (all species)

Species

Cockroach (Blattella germanica)

MiRBase ID

Paralogues

Bge-Mir-29-P1l Bge-Mir-29-P2g Bge-Mir-29-P2h

Orthologues

Aae-Mir-29-P1 Aga-Mir-29-P1 Agr-Mir-29-P1 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cin-Mir-29-o1 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dpu-Mir-29-P1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Esc-Mir-29-P1 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Isc-Mir-29-P1 Lhy-Mir-29-P1 Llo-Mir-29-P1 Mgi-Mir-29-P1 Mom-Mir-29-P1 Npo-Mir-29-P1 Obi-Mir-29-P1 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pau-Mir-29-P1 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rph-Mir-29-P1 Sko-Mir-29-P1 Snu-Mir-29-P1 Spu-Mir-29-P1 Tca-Mir-29-P1 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1

Node of Origin (locus)

B. germanica

Node of Origin (family)

Bilateria

Genome context
(Bger_2.0)

JPZV02062171.1: 158-223 [+] Ensembl

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

UUAUUUUCAUUACGUGAGACUUGCUUGAGGACUGGUUUCAAGUUGGUGGUAAGAUUCAGCUUCAUUCAAAACUCUAGCACCAUUUGAAAUCAGUGCUUCAGUAGGUCCAGCCAUCUGGAUUUAACA

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Structure

        10          20        30        40        50        60   
UUAUUUUCAUUACGUGA--|       U   G             U    G  A  UUCAGCUU 
                   GACUUGCU GAG ACUGGUUUCAAGU GGUG UA GA        C
                   CUGGAUGA UUC UGACUAAAGUUUA CCAC AU CU        A
ACAAUUUAGGUCUACCGAC^       C   G             -    G  -  CAAAACUU 
    120       110       100        90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Co	Co	Di	Di	Eg	Eg	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Ny	Ny	Ny	Ny	Ny	Ny	Ny	Ny	Ov

Star sequence

Bge-Mir-29-P1k_5p*

mirBase accession

None

Sequence

0- ACUGGUUUCAAGUUGGUGGUAAGA -24

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Mature sequence

Bge-Mir-29-P1k_3p

mirBase accession

None

Sequence

44- UAGCACCAUUUGAAAUCAGUGC -66

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