MirGeneDB 3.0

MirGeneDB ID

Gsp-Mir-29

Family name

MIR-29 (all species)

Species

Montseny horsehair worm (Gordionus sp.)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-29-P1 Aae-Mir-29-P2h Aca-Mir-29-P1b-v1 Aca-Mir-29-P1d-v1 Aca-Mir-29-P2b Aca-Mir-29-P2d Aga-Mir-29-P1 Aga-Mir-29-P2h Agr-Mir-29-P1 Agr-Mir-29-P2 Ami-Mir-29-P1b-v1 Ami-Mir-29-P1d-v1 Ami-Mir-29-P2b Ami-Mir-29-P2d Asu-Mir-29-P1 Asu-Mir-29-P2 Ava-Mir-29-o8 Ava-Mir-29-o9 Bfl-Mir-29-P1 Bfl-Mir-29-P2 Bge-Mir-29-P1k Bge-Mir-29-P1l Bge-Mir-29-P2g Bge-Mir-29-P2h Bla-Mir-29-P1 Bla-Mir-29-P2 Bpl-Mir-29-o3 Bta-Mir-29-P1b-v1 Bta-Mir-29-P1d7-v1 Bta-Mir-29-P1d8-v1 Bta-Mir-29-P2b Bta-Mir-29-P2d7 Bta-Mir-29-P2d8 Cbr-Mir-29-P1 Cbr-Mir-29-P2 Cel-Mir-29-P1 Cel-Mir-29-P2 Cfa-Mir-29-P1b-v1 Cfa-Mir-29-P1d-v1 Cfa-Mir-29-P2b Cfa-Mir-29-P2d7 Cfa-Mir-29-P2d8 Cin-Mir-29-o1 Cja-Mir-29-P1b-v1 Cja-Mir-29-P1d-v1 Cja-Mir-29-P2b Cja-Mir-29-P2d Cli-Mir-29-P1b-v1 Cli-Mir-29-P1d-v1 Cli-Mir-29-P2b Cli-Mir-29-P2d Cmi-Mir-29-P1b Cmi-Mir-29-P1d Cmi-Mir-29-P2a-v1 Cmi-Mir-29-P2b Cmi-Mir-29-P2d Cpi-Mir-29-P1b-v1 Cpi-Mir-29-P1d-v1 Cpi-Mir-29-P2b Cpi-Mir-29-P2d Cpo-Mir-29-P1b-v1 Cpo-Mir-29-P1d-v1 Cpo-Mir-29-P2b Cpo-Mir-29-P2d Csc-Mir-29-P1 Cte-Mir-29-P1 Cte-Mir-29-P2 Dan-Mir-29-P1 Dan-Mir-29-P2g Dan-Mir-29-P2h Dgr-Mir-29-P1 Dgr-Mir-29-P2 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dma-Mir-29-P2 Dme-Mir-29-P1 Dme-Mir-29-P2g Dme-Mir-29-P2h Dmo-Mir-29-P1 Dmo-Mir-29-P2g Dmo-Mir-29-P2h Dno-Mir-29-P1b-v1 Dno-Mir-29-P1d-v1 Dno-Mir-29-P2b Dno-Mir-29-P2d Dpu-Mir-29-P1 Dpu-Mir-29-P2 Dre-Mir-29-P1b1 Dre-Mir-29-P1d1 Dre-Mir-29-P1d2 Dre-Mir-29-P2b1 Dre-Mir-29-P2d2 Dsi-Mir-29-P1 Dsi-Mir-29-P2g Dsi-Mir-29-P2h Dya-Mir-29-P1 Dya-Mir-29-P2g Dya-Mir-29-P2h Eba-Mir-29-P1 Eba-Mir-29-P2 Ebu-Mir-29-P1e Ebu-Mir-29-P1f Ebu-Mir-29-P2e Ebu-Mir-29-P2f Eca-Mir-29-P1b-v1 Eca-Mir-29-P1d-v1 Eca-Mir-29-P2b-v1 Eca-Mir-29-P2d7 Eca-Mir-29-P2d8 Efe-Mir-29-P1i Efe-Mir-29-P1j Efe-Mir-29-P2k Efe-Mir-29-P2l Esc-Mir-29-P1 Esc-Mir-29-P2 Ete-Mir-29-P1b-v1 Ete-Mir-29-P1d-v1 Ete-Mir-29-P2b Ete-Mir-29-P2d Gga-Mir-29-P1b-v1 Gga-Mir-29-P1d-v1 Gga-Mir-29-P2b Gga-Mir-29-P2d Gja-Mir-29-P1b-v1 Gja-Mir-29-P1d-v1 Gja-Mir-29-P2b Gja-Mir-29-P2d Gmo-Mir-29-P1b1 Gmo-Mir-29-P1b2 Gmo-Mir-29-P1d1 Gmo-Mir-29-P1d2 Gmo-Mir-29-P2b1 Gmo-Mir-29-P2d1 Gmo-Mir-29-P2d2 Gpa-Mir-29-P1 Gpa-Mir-29-P2g Gpa-Mir-29-P2h Hme-Mir-29-P1 Hme-Mir-29-P2h Hmi-Mir-29-o4 Hmi-Mir-29-o5a Hmi-Mir-29-o5b Hru-Mir-29-P1 Hru-Mir-29-P2 Hsa-Mir-29-P1b-v1 Hsa-Mir-29-P1d-v1 Hsa-Mir-29-P2b Hsa-Mir-29-P2d Isc-Mir-29-P1 Laf-Mir-29-P1b-v1 Laf-Mir-29-P1d-v1 Laf-Mir-29-P2b Laf-Mir-29-P2d Lan-Mir-29-P1g Lan-Mir-29-P1h Lan-Mir-29-P2i Lan-Mir-29-P2j Lch-Mir-29-P1b Lch-Mir-29-P1d Lch-Mir-29-P2a Lch-Mir-29-P2b Lch-Mir-29-P2d Lgi-Mir-29-P2 Lhy-Mir-29-P1 Lhy-Mir-29-P2 Llo-Mir-29-P1 Llo-Mir-29-P2 Loc-Mir-29-P1b-v1 Loc-Mir-29-P1d Loc-Mir-29-P2a Loc-Mir-29-P2b Loc-Mir-29-P2d-v1 Lpo-Mir-29-P1m Lpo-Mir-29-P1n Mal-Mir-29-P1b1-v1 Mal-Mir-29-P1b2-v1 Mal-Mir-29-P1d1 Mal-Mir-29-P1d2-v1 Mal-Mir-29-P2b1-v1 Mal-Mir-29-P2d1 Mal-Mir-29-P2d2 Mdo-Mir-29-P1b-v1 Mdo-Mir-29-P1d-v1 Mdo-Mir-29-P2b Mdo-Mir-29-P2d Mgi-Mir-29-P1 Mgi-Mir-29-P2 Mml-Mir-29-P1b-v1 Mml-Mir-29-P1d-v1 Mml-Mir-29-P2b Mml-Mir-29-P2d Mmr-Mir-29-P1b-v1 Mmr-Mir-29-P1d-v1 Mmr-Mir-29-P2b-v1 Mmr-Mir-29-P2d Mmu-Mir-29-P1b-v1 Mmu-Mir-29-P1d-v1 Mmu-Mir-29-P2b Mmu-Mir-29-P2d Mom-Mir-29-P1 Mom-Mir-29-P2 Mun-Mir-29-P1b Mun-Mir-29-P1d-v1 Mun-Mir-29-P2b Mun-Mir-29-P2d Neu-Mir-29-P1b-v1 Neu-Mir-29-P2b Neu-Mir-29-P2d Npo-Mir-29-P1 Npo-Mir-29-P2 Oan-Mir-29-P1b-v1 Oan-Mir-29-P1d-v1 Oan-Mir-29-P2b Oan-Mir-29-P2d Obi-Mir-29-P1 Obi-Mir-29-P2 Ocu-Mir-29-P1b-v1 Ocu-Mir-29-P1d-v1 Ocu-Mir-29-P2b Ocu-Mir-29-P2d Ofu-Mir-29-P1 Ofu-Mir-29-P2 Ovu-Mir-29-P1 Ovu-Mir-29-P2 Pab-Mir-29-P1b-v1 Pab-Mir-29-P1d-v1 Pab-Mir-29-P2b Pab-Mir-29-P2d Pau-Mir-29-P1 Pau-Mir-29-P2 Pbv-Mir-29-P1b-v1 Pbv-Mir-29-P1d-v1 Pbv-Mir-29-P2b Pbv-Mir-29-P2d Pca-Mir-29-o6 Pca-Mir-29-o7 Pcr-Mir-29-P1 Pcr-Mir-29-P2 Pdu-Mir-29-P1 Pdu-Mir-29-P2 Pfl-Mir-29-P1 Pfl-Mir-29-P2 Pma-Mir-29-P1o1 Pma-Mir-29-P1o2 Pma-Mir-29-P2o1 Pma-Mir-29-P2o2 Pmi-Mir-29-P1 Pmi-Mir-29-P2 Pve-Mir-29-P1 Pve-Mir-29-P2 Rno-Mir-29-P1b-v1 Rno-Mir-29-P1d5-v1 Rno-Mir-29-P1d6-v1 Rno-Mir-29-P2b Rno-Mir-29-P2d5 Rno-Mir-29-P2d6 Rph-Mir-29-P1 Rph-Mir-29-P2 Sha-Mir-29-P1b-v1 Sha-Mir-29-P1d-v1 Sha-Mir-29-P2b Sha-Mir-29-P2d Sko-Mir-29-P1 Sko-Mir-29-P2 Sme-Mir-29-o2 Snu-Mir-29-P1 Snu-Mir-29-P2q Snu-Mir-29-P2r Spt-Mir-29-P1b Spt-Mir-29-P1d Spt-Mir-29-P2b Spt-Mir-29-P2d Spu-Mir-29-P1 Spu-Mir-29-P2 Sro-Mir-29-P1p1 Sro-Mir-29-P1p2 Sro-Mir-29-P2p1 Sro-Mir-29-P2p2 Sto-Mir-29-P1b Sto-Mir-29-P1d Sto-Mir-29-P2b Sto-Mir-29-P2d Tca-Mir-29-P1 Tca-Mir-29-P2g Tca-Mir-29-P2h Tgu-Mir-29-P1b-v1 Tgu-Mir-29-P1d-v1 Tgu-Mir-29-P2b Tgu-Mir-29-P2d Tni-Mir-29-P1b1 Tni-Mir-29-P1b2 Tni-Mir-29-P1d1 Tni-Mir-29-P1d2 Tni-Mir-29-P2b1 Tni-Mir-29-P2d1 Tni-Mir-29-P2d2 Tur-Mir-29-P1 War-Mir-29-P1 War-Mir-29-P2 Xbo-Mir-29-P1 Xbo-Mir-29-P2 Xla-Mir-29-P1b3 Xla-Mir-29-P1b4 Xla-Mir-29-P1d3 Xla-Mir-29-P1d4 Xla-Mir-29-P2b3 Xla-Mir-29-P2b4 Xla-Mir-29-P2d3 Xla-Mir-29-P2d4 Xtr-Mir-29-P1b-v1 Xtr-Mir-29-P1d Xtr-Mir-29-P2b Xtr-Mir-29-P2d

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCA_954871325.1_tfGorGonz1-WG_genomic)

OX940783.1: 11643377-11643440 [+]

Seed

Precursor
(pre-Mir +30nt flank)

GAUACAGAAGAGUUAGUUAAUACUUGAUAAACUGAAUUCUUUUGAUAGCCAGAUUGAGUAAAAAAAAAUUUCUAGCACCAUUCGAAUUCAGUAUUACCGAUAUUAAAACUUACUAUGUUCAAUA

Get precursor sequence

Structure

        10          20        30         40        50        60  
GAUACAGAAGAGUUAGU--|    C   A   -         UUU  AUA  C   UUGAGUAA 
                   UAAUA UUG UAA ACUGAAUUC   UG   GC AGA        \
                   AUUAU AGC AUU UGACUUAAG   AC   CG UCU        A
AUAACUUGUAUCAUUCAAA^    -   C   A         CUU  CA-  A   UUAAAAAA 
  120       110        100        90        80         70

Deep sequencing

3' NTU

No

Motifs

No

Tissue expression

-

+

Wh	Wh

Star sequence

Gsp-Mir-29_5p* (predicted)

mirBase accession

None

Sequence

0- ACUGAAUUCUUUUGAUAGCCAGA -23

Get sequence

Mature sequence

Gsp-Mir-29_3p

mirBase accession

None

Sequence

42- UAGCACCAUUCGAAUUCAGUAU -64

Get sequence