Mir-29-P2b

MirGeneDB ID

Tgu-Mir-29-P2b

Family name

MIR-29 (all species)

Species

Zebra finch (Taeniopygia guttata)

MiRBase ID

tgu-mir-29a-1

Paralogues

Tgu-Mir-29-P1b-v1 Tgu-Mir-29-P1d-v1 Tgu-Mir-29-P2d

Orthologues

Aca-Mir-29-P2b Agr-Mir-29-P2 Ami-Mir-29-P2b Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Bta-Mir-29-P2b Cbr-Mir-29-P2 Cel-Mir-29-P2 Cfa-Mir-29-P2b Cja-Mir-29-P2b Cli-Mir-29-P2b Cmi-Mir-29-P2b Cpi-Mir-29-P2b Cpo-Mir-29-P2b Cte-Mir-29-P2 Dgr-Mir-29-P2 Dma-Mir-29-P2 Dno-Mir-29-P2b Dpu-Mir-29-P2 Dre-Mir-29-P2b1 Eba-Mir-29-P2 Eca-Mir-29-P2b-v1 Esc-Mir-29-P2 Ete-Mir-29-P2b Gga-Mir-29-P2b Gja-Mir-29-P2b Gmo-Mir-29-P2b1 Gsp-Mir-29 Hru-Mir-29-P2 Hsa-Mir-29-P2b Laf-Mir-29-P2b Lch-Mir-29-P2b Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Loc-Mir-29-P2b Mal-Mir-29-P2b1-v1 Mdo-Mir-29-P2b Mgi-Mir-29-P2 Mml-Mir-29-P2b Mmr-Mir-29-P2b-v1 Mmu-Mir-29-P2b Mom-Mir-29-P2 Mun-Mir-29-P2b Neu-Mir-29-P2b Npo-Mir-29-P2 Oan-Mir-29-P2b Obi-Mir-29-P2 Ocu-Mir-29-P2b Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pab-Mir-29-P2b Pau-Mir-29-P2 Pbv-Mir-29-P2b Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rno-Mir-29-P2b Rph-Mir-29-P2 Sha-Mir-29-P2b Sko-Mir-29-P2 Sme-Mir-29-o2 Spt-Mir-29-P2b Spu-Mir-29-P2 Sto-Mir-29-P2b Tni-Mir-29-P2b1 War-Mir-29-P2 Xbo-Mir-29-P2 Xla-Mir-29-P2b3 Xla-Mir-29-P2b4 Xtr-Mir-29-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(TaeGut1_add)

1A: 2243438-2243497 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2b)

Mir-29-P1b-v1 1A: 2242421-2242484 [+] UCSC Ensembl
Mir-29-P1b-v2 1A: 2242422-2242483 [+] UCSC Ensembl
Mir-29-P2b 1A: 2243438-2243497 [+] UCSC Ensembl

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

UGCAGAUCUCCGUAACCCCUUUAGAGGAUGACUGAUUUCUUUUGGUGUUCAGAGUCAAUAAUAAUUUCUAGCACCAUUUGAAAUCGGUUAUAGUGAUUGGGGAAUUGCACCUUGUGAAUU

Get precursor sequence

Structure

        10          20        30        40        50          
UGCAGAUCUCCGUAACC--|  UUAGAGG            UUU       C   GUCAAU 
                   CCU       AUGACUGAUUUC   UGGUGUU AGA      \
                   GGG       UAUUGGCUAAAG   ACCACGA UCU      A
UUAAGUGUUCCACGUUAAG^  UUAGUGA            UUU       -   UUAAUA 
.       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma	Ma

Star sequence

Tgu-Mir-29-P2b_5p*

mirBase accession

MIMAT0026990

Sequence

0- ACUGAUUUCUUUUGGUGUUCAGA -23

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Mature sequence

Tgu-Mir-29-P2b_3p

mirBase accession

MIMAT0014532

Sequence

38- UAGCACCAUUUGAAAUCGGUUA -60

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