MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-29-P2b

Family name MIR-29 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-29a
Paralogues Rno-Mir-29-P1b-v1  Rno-Mir-29-P1d5-v1  Rno-Mir-29-P1d6-v1  Rno-Mir-29-P2d5  Rno-Mir-29-P2d6 
Orthologues Aca-Mir-29-P2b  Agr-Mir-29-P2  Ami-Mir-29-P2b  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2b  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2b  Cja-Mir-29-P2b  Cli-Mir-29-P2b  Cmi-Mir-29-P2b  Cpi-Mir-29-P2b  Cpo-Mir-29-P2b  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dno-Mir-29-P2b  Dpu-Mir-29-P2  Dre-Mir-29-P2b1  Eba-Mir-29-P2  Eca-Mir-29-P2b-v1  Esc-Mir-29-P2  Ete-Mir-29-P2b  Gga-Mir-29-P2b  Gja-Mir-29-P2b  Gmo-Mir-29-P2b1  Gsp-Mir-29  Hru-Mir-29-P2  Hsa-Mir-29-P2b  Laf-Mir-29-P2b  Lch-Mir-29-P2b  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Loc-Mir-29-P2b  Mal-Mir-29-P2b1-v1  Mdo-Mir-29-P2b  Mgi-Mir-29-P2  Mml-Mir-29-P2b  Mmr-Mir-29-P2b-v1  Mmu-Mir-29-P2b  Mom-Mir-29-P2  Mun-Mir-29-P2b  Neu-Mir-29-P2b  Npo-Mir-29-P2  Oan-Mir-29-P2b  Obi-Mir-29-P2  Ocu-Mir-29-P2b  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pab-Mir-29-P2b  Pau-Mir-29-P2  Pbv-Mir-29-P2b  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rph-Mir-29-P2  Sha-Mir-29-P2b  Sko-Mir-29-P2  Sme-Mir-29-o2  Spt-Mir-29-P2b  Spu-Mir-29-P2  Sto-Mir-29-P2b  Tgu-Mir-29-P2b  Tni-Mir-29-P2b1  War-Mir-29-P2  Xbo-Mir-29-P2  Xla-Mir-29-P2b3  Xla-Mir-29-P2b4  Xtr-Mir-29-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(rn6)		 chr4: 58343944-58344003 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2b)		 Mir-29-P2b chr4: 58343944-58344003 [-] UCSC Ensembl
Mir-29-P1b-v1 chr4: 58344318-58344381 [-] UCSC Ensembl
Mir-29-P1b-v2 chr4: 58344319-58344380 [-] UCSC Ensembl
Seed AGCACCA
Precursor
(pre-Mir +30nt flank)		 
ACAUGACCUCUUGUGACCCCUUAGAGGAUGACUGAUUUCUUUUGGUGUUCAGAGUCAAUAGAAUUUUCUAGCACCAUCUGAAAUCGGUUAUAAUGAUUGGGGAAAAGCACCAUGCAGCUG
Get precursor sequence
Structure
        10         20         30        40        50          
ACAUGACCUCUUGUGAC-    UAGAGG-|           UUU       C   GUCAAU 
                  CCCU       AUGACUGAUUUC   UGGUGUU AGA      \
                  GGGG       UAUUGGCUAAAG   ACCACGA UCU      A
GUCGACGUACCACGAAAA    UUAGUAA^           UCU       -   UUUAAG 
.       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-29-P2b_5p*
mirBase accessionMIMAT0004718
Sequence 
0- ACUGAUUUCUUUUGGUGUUCAGA -23
Get sequence
Proposed targets microrna.org: MIMAT0004718
TargetScanVert: rno-miR-29a-5p
miRDB: MIMAT0004718
Mature sequence

Rno-Mir-29-P2b_3p
mirBase accessionMIMAT0000802
Sequence 
38- UAGCACCAUCUGAAAUCGGUUA -60
Get sequence
Proposed targets microrna.org: MIMAT0000802
TargetScanVert: rno-miR-29a-3p
miRDB: MIMAT0000802