MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-29-P2

Family name MIR-29 (all species)
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues Dpu-Mir-29-P1 
Orthologues Aae-Mir-29-P2h  Aca-Mir-29-P2b  Aca-Mir-29-P2d  Aga-Mir-29-P2h  Agr-Mir-29-P2  Ami-Mir-29-P2b  Ami-Mir-29-P2d  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bge-Mir-29-P2g  Bge-Mir-29-P2h  Bla-Mir-29-P2  Bta-Mir-29-P2b  Bta-Mir-29-P2d7  Bta-Mir-29-P2d8  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2b  Cfa-Mir-29-P2d7  Cfa-Mir-29-P2d8  Cja-Mir-29-P2b  Cja-Mir-29-P2d  Cli-Mir-29-P2b  Cli-Mir-29-P2d  Cmi-Mir-29-P2a-v1  Cmi-Mir-29-P2b  Cmi-Mir-29-P2d  Cpi-Mir-29-P2b  Cpi-Mir-29-P2d  Cpo-Mir-29-P2b  Cpo-Mir-29-P2d  Cte-Mir-29-P2  Dan-Mir-29-P2g  Dan-Mir-29-P2h  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dme-Mir-29-P2g  Dme-Mir-29-P2h  Dmo-Mir-29-P2g  Dmo-Mir-29-P2h  Dno-Mir-29-P2b  Dno-Mir-29-P2d  Dre-Mir-29-P2b1  Dre-Mir-29-P2d2  Dsi-Mir-29-P2g  Dsi-Mir-29-P2h  Dya-Mir-29-P2g  Dya-Mir-29-P2h  Eba-Mir-29-P2  Ebu-Mir-29-P2e  Ebu-Mir-29-P2f  Eca-Mir-29-P2b-v1  Eca-Mir-29-P2d7  Eca-Mir-29-P2d8  Efe-Mir-29-P2k  Efe-Mir-29-P2l  Esc-Mir-29-P2  Ete-Mir-29-P2b  Ete-Mir-29-P2d  Gga-Mir-29-P2b  Gga-Mir-29-P2d  Gja-Mir-29-P2b  Gja-Mir-29-P2d  Gmo-Mir-29-P2b1  Gmo-Mir-29-P2d1  Gmo-Mir-29-P2d2  Gpa-Mir-29-P2g  Gpa-Mir-29-P2h  Gsp-Mir-29  Hme-Mir-29-P2h  Hru-Mir-29-P2  Hsa-Mir-29-P2b  Hsa-Mir-29-P2d  Laf-Mir-29-P2b  Laf-Mir-29-P2d  Lan-Mir-29-P2i  Lan-Mir-29-P2j  Lch-Mir-29-P2a  Lch-Mir-29-P2b  Lch-Mir-29-P2d  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Loc-Mir-29-P2a  Loc-Mir-29-P2b  Loc-Mir-29-P2d-v1  Mal-Mir-29-P2b1-v1  Mal-Mir-29-P2d1  Mal-Mir-29-P2d2  Mdo-Mir-29-P2b  Mdo-Mir-29-P2d  Mgi-Mir-29-P2  Mml-Mir-29-P2b  Mml-Mir-29-P2d  Mmr-Mir-29-P2b-v1  Mmr-Mir-29-P2d  Mmu-Mir-29-P2b  Mmu-Mir-29-P2d  Mom-Mir-29-P2  Mun-Mir-29-P2b  Mun-Mir-29-P2d  Neu-Mir-29-P2b  Neu-Mir-29-P2d  Npo-Mir-29-P2  Oan-Mir-29-P2b  Oan-Mir-29-P2d  Obi-Mir-29-P2  Ocu-Mir-29-P2b  Ocu-Mir-29-P2d  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pab-Mir-29-P2b  Pab-Mir-29-P2d  Pau-Mir-29-P2  Pbv-Mir-29-P2b  Pbv-Mir-29-P2d  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pma-Mir-29-P2o1  Pma-Mir-29-P2o2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rno-Mir-29-P2b  Rno-Mir-29-P2d5  Rno-Mir-29-P2d6  Rph-Mir-29-P2  Sha-Mir-29-P2b  Sha-Mir-29-P2d  Sko-Mir-29-P2  Sme-Mir-29-o2  Snu-Mir-29-P2q  Snu-Mir-29-P2r  Spt-Mir-29-P2b  Spt-Mir-29-P2d  Spu-Mir-29-P2  Sro-Mir-29-P2p1  Sro-Mir-29-P2p2  Sto-Mir-29-P2b  Sto-Mir-29-P2d  Tca-Mir-29-P2g  Tca-Mir-29-P2h  Tgu-Mir-29-P2b  Tgu-Mir-29-P2d  Tni-Mir-29-P2b1  Tni-Mir-29-P2d1  Tni-Mir-29-P2d2  War-Mir-29-P2  Xbo-Mir-29-P2  Xla-Mir-29-P2b3  Xla-Mir-29-P2b4  Xla-Mir-29-P2d3  Xla-Mir-29-P2d4  Xtr-Mir-29-P2b  Xtr-Mir-29-P2d 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_32: 69280-69354 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2)		 Mir-965 DAPPUscaffold_32: 27782-27843 [-] Ensembl
Mir-36 DAPPUscaffold_32: 68520-68579 [-] Ensembl
Mir-279-P1d DAPPUscaffold_32: 68663-68726 [-] Ensembl
Mir-29-P2 DAPPUscaffold_32: 69280-69354 [-] Ensembl
Mir-2-P5 DAPPUscaffold_32: 69416-69503 [-] Ensembl
Mir-9-P9 DAPPUscaffold_32: 69575-69633 [-] Ensembl
Mir-279-P1c DAPPUscaffold_32: 69703-69769 [-] Ensembl
Seed UAGCACC
Precursor
(pre-Mir +30nt flank)		 
UGUUUGUGUGUGUGUACACAGCCCCCCAGUGCUGAGUCUAGUGGAUGAUGUGCUAGACAUUUUAGCUUGAAUUCUUGGUUGCAUAGCACCACGGGAUUCAGCCGCUGGUGUGUCGUGGUUUUAUAUUUUAUUCAU
Get precursor sequence
Structure
        10          20        30         40        50        60       
UGUUUGUGUGUGUGUAC--  A  CCC     -|        A    A  A     UAGACAUUUUAGC 
                   AC GC   CCAGU GCUGAGUCU GUGG UG UGUGC             \
                   UG UG   GGUCG CGACUUAGG CACC AC AUACG             U
UACUUAUUUUAUAUUUUGG  C  UGU     C^        G    -  G     UUGGUUCUUAAGU 
   130       120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Dpu-Mir-29-P2_5p*
mirBase accessionNone
Sequence 
0- GCUGAGUCUAGUGGAUGAUGUGC -23
Get sequence
Mature sequence

Dpu-Mir-29-P2_3p
mirBase accessionNone
Sequence 
52- AUAGCACCACGGGAUUCAGCCGC -75
Get sequence