Mir-29-P2o1

MirGeneDB ID

Pma-Mir-29-P2o1

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-29d

Paralogues

Pma-Mir-29-P1o1 Pma-Mir-29-P1o2 Pma-Mir-29-P2o2

Orthologues

Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cgi-Mir-29-P2 Cin-Mir-29-P2 Csc-Mir-29-P2 Cte-Mir-29-P2 Esc-Mir-29-P2 Isc-Mir-29-P2 Lgi-Mir-29-P2 Npo-Mir-29-P2 Obi-Mir-29-P2 Ovu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Sko-Mir-29-P2 Spu-Mir-29-P2 Xbo-Mir-29-P2

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046098.1: 8341169-8341232 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2o1)

Mir-29-P1o1 NC_046098.1: 8340107-8340168 [-] UCSC Ensembl
Mir-29-P2o1 NC_046098.1: 8341169-8341232 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACCACCACAGAUCCUUCUGCUCCUGGGAGCUGGUUUCACGUGGUGGCUUAGACUGUGAUGUUCCUUCUCUAGCACCAUAUGAAAUCGGUGUCCCUGGAGUUGGACAUACUUCACUAGACGGC

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Structure

        10          20        30         40        50        60  
CCACCACCACAGAUCCU--  U     U    -|         CG     G  U   CUGUGAU 
                   UC GCUCC GGGA GCUGGUUUCA  UGGUG CU AGA       \
                   GG UGAGG CCCU UGGCUAAAGU  ACCAC GA UCU       G
CGGCAGAUCACUUCAUACA  U     U    G^         AU     -  -   CUUCCUU 
  120       110       100        90        80          70

Deep sequencing

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Comment

There is a single snp between the assembled genome and the miRBase entry.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-29-P2o1_5p*

mirBase accession

MIMAT0019420

Sequence

0- GCUGGUUUCACGUGGUGGCUUAGA -24

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Mature sequence

Pma-Mir-29-P2o1_3p

mirBase accession

MIMAT0019421

Sequence

41- UAGCACCAUAUGAAAUCGGUGUC -64

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