Mir-29-P2o2

MirGeneDB ID

Pma-Mir-29-P2o2

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-29c

Paralogues

Pma-Mir-29-P1o1 Pma-Mir-29-P1o2 Pma-Mir-29-P2o1

Orthologues

Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cgi-Mir-29-P2 Cin-Mir-29-P2 Csc-Mir-29-P2 Cte-Mir-29-P2 Esc-Mir-29-P2 Isc-Mir-29-P2 Lgi-Mir-29-P2 Npo-Mir-29-P2 Obi-Mir-29-P2 Ovu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Sko-Mir-29-P2 Spu-Mir-29-P2 Xbo-Mir-29-P2

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046082.1: 14313120-14313180 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2o2)

Mir-29-P1o2 NC_046082.1: 14311950-14312009 [-] UCSC Ensembl
Mir-29-P2o2 NC_046082.1: 14313120-14313180 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGCGUGGCGGGAGAGGAGCCUCCUACCAGGCUGGUUUCACGUGGUGGCUUGAUGUGAAAGUGCGAUUCUAGCACCAUUUGAAAUCAGUGUUGGUGGGCAGAGCACGUGCGCCCACACCUG

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Structure

        10        20         30         40        50        60
GGGCGUGGCGGGAGAGGAGC  -        -|         C      G  U  UGUGAA 
                    CU CCUACCAG GCUGGUUUCA GUGGUG CU GA      A
                    GA GGGUGGUU UGACUAAAGU UACCAC GA CU      G
GUCCACACCCGCGUGCACGA  C        G^         U      -  U  UAGCGU 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-29-P2o2_5p*

mirBase accession

None

Sequence

0- GCUGGUUUCACGUGGUGGCUUGA -23

Get sequence

Mature sequence

Pma-Mir-29-P2o2_3p

mirBase accession

MIMAT0019419

Sequence

39- UAGCACCAUUUGAAAUCAGUGU -61

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