MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-29-P2d

Family name MIR-29 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-29-P1b  Lch-Mir-29-P1d  Lch-Mir-29-P2a  Lch-Mir-29-P2b 
Orthologues Aca-Mir-29-P2d  Agr-Mir-29-P2  Ami-Mir-29-P2d  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2d7  Bta-Mir-29-P2d8  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2d7  Cfa-Mir-29-P2d8  Cja-Mir-29-P2d  Cli-Mir-29-P2d  Cmi-Mir-29-P2d  Cpi-Mir-29-P2d  Cpo-Mir-29-P2d  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dno-Mir-29-P2d  Dpu-Mir-29-P2  Dre-Mir-29-P2d2  Eba-Mir-29-P2  Eca-Mir-29-P2d7  Eca-Mir-29-P2d8  Esc-Mir-29-P2  Ete-Mir-29-P2d  Gga-Mir-29-P2d  Gja-Mir-29-P2d  Gmo-Mir-29-P2d1  Gmo-Mir-29-P2d2  Gsp-Mir-29  Hru-Mir-29-P2  Hsa-Mir-29-P2d  Laf-Mir-29-P2d  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Loc-Mir-29-P2d-v1  Mal-Mir-29-P2d1  Mal-Mir-29-P2d2  Mdo-Mir-29-P2d  Mgi-Mir-29-P2  Mml-Mir-29-P2d  Mmr-Mir-29-P2d  Mmu-Mir-29-P2d  Mom-Mir-29-P2  Mun-Mir-29-P2d  Neu-Mir-29-P2d  Npo-Mir-29-P2  Oan-Mir-29-P2d  Obi-Mir-29-P2  Ocu-Mir-29-P2d  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pab-Mir-29-P2d  Pau-Mir-29-P2  Pbv-Mir-29-P2d  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rno-Mir-29-P2d5  Rno-Mir-29-P2d6  Rph-Mir-29-P2  Sha-Mir-29-P2d  Sko-Mir-29-P2  Sme-Mir-29-o2  Spt-Mir-29-P2d  Spu-Mir-29-P2  Sto-Mir-29-P2d  Tgu-Mir-29-P2d  Tni-Mir-29-P2d1  Tni-Mir-29-P2d2  War-Mir-29-P2  Xbo-Mir-29-P2  Xla-Mir-29-P2d3  Xla-Mir-29-P2d4  Xtr-Mir-29-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 JH126576.1: 4860894-4860951 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2d)		 Mir-29-P1d JH126576.1: 4859546-4859610 [+] Ensembl
Mir-29-P2d JH126576.1: 4860894-4860951 [+] Ensembl
Seed AGCACCA
Precursor
(pre-Mir +30nt flank)		 
GAAGACCACUAACCUCCCUUACCCAGGUUGACUGAUUUCUUCUGGUGUUCAGAGUCAGUUCAUUUCUAGCACCAUUUGAAAUCGGUUACAAUGUAGAGGAAAAAGCAACAGACUGGGA
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Structure
        10          20        30        40        50         
GAAGACCACUAACCUCC--|  ACC  GGU           UUC       C   GUCAG 
                   CUU   CA   UGACUGAUUUC   UGGUGUU AGA     \
                   GGA   GU   AUUGGCUAAAG   ACCACGA UCU     U
AGGGUCAGACAACGAAAAA^  GAU  AAC           UUU       -   UUACU 
      110       100        90        80        70         60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-29-P2d_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACUGAUUUCUUCUGGUGUUCAGA -23
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Mature sequence

Lch-Mir-29-P2d_3p (predicted)
mirBase accessionNone
Sequence 
36- UAGCACCAUUUGAAAUCGGUUA -58
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