Mir-29-P2d1

MirGeneDB ID

Tni-Mir-29-P2d1

Family name

MIR-29 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-29-P1b1 Tni-Mir-29-P1b2 Tni-Mir-29-P1d1 Tni-Mir-29-P1d2 Tni-Mir-29-P2b1 Tni-Mir-29-P2d2

Orthologues

Aca-Mir-29-P2d Agr-Mir-29-P2 Ami-Mir-29-P2d Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cja-Mir-29-P2d Cli-Mir-29-P2d Cmi-Mir-29-P2d Cpi-Mir-29-P2d Cpo-Mir-29-P2d Cte-Mir-29-P2 Dgr-Mir-29-P2 Dma-Mir-29-P2 Dno-Mir-29-P2d Dpu-Mir-29-P2 Eba-Mir-29-P2 Esc-Mir-29-P2 Ete-Mir-29-P2d Gga-Mir-29-P2d Gja-Mir-29-P2d Gmo-Mir-29-P2d1 Gsp-Mir-29 Hru-Mir-29-P2 Hsa-Mir-29-P2d Laf-Mir-29-P2d Lch-Mir-29-P2d Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Loc-Mir-29-P2d-v1 Mal-Mir-29-P2d1 Mdo-Mir-29-P2d Mgi-Mir-29-P2 Mml-Mir-29-P2d Mmr-Mir-29-P2d Mmu-Mir-29-P2d Mom-Mir-29-P2 Mun-Mir-29-P2d Neu-Mir-29-P2d Npo-Mir-29-P2 Oan-Mir-29-P2d Obi-Mir-29-P2 Ocu-Mir-29-P2d Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pab-Mir-29-P2d Pau-Mir-29-P2 Pbv-Mir-29-P2d Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rph-Mir-29-P2 Sha-Mir-29-P2d Sko-Mir-29-P2 Sme-Mir-29-o2 Spt-Mir-29-P2d Spu-Mir-29-P2 Sto-Mir-29-P2d Tgu-Mir-29-P2d War-Mir-29-P2 Xbo-Mir-29-P2 Xtr-Mir-29-P2d

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

11: 8724289-8724347 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2d1)

Mir-29-P1d1 11: 8724044-8724104 [+] UCSC Ensembl
Mir-29-P2d1 11: 8724289-8724347 [+] UCSC Ensembl

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

UAGAUCCGAGCCACCCUCUUACCAGGGCUGACCGUUUUCCUCUGGUGUUUAGAGUAUUCUGCAUUUCUAGCACCAUUUGAAAUCGGUUACAAUGUGGAGGGGAUGUCAUCCCCUCUGAU

Get precursor sequence

Structure

        10         20         30        40        50         
UAGAUCCGAGCCACCCU-  UA   GGGC-|     U    CUC       U   GUAUU 
                  CU  CCA     UGACCG UUUC   UGGUGUU AGA     C
                  GG  GGU     AUUGGC AAAG   ACCACGA UCU     U
UAGUCUCCCCUACUGUAG  GA   GUAAC^     U    UUU       -   UUACG 
       110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-29-P2d1_5p*

mirBase accession

None

Sequence

0- ACCGUUUUCCUCUGGUGUUUAGA -23

Get sequence

Mature sequence

Tni-Mir-29-P2d1_3p

mirBase accession

None

Sequence

37- UAGCACCAUUUGAAAUCGGUUA -59

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