MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-29-P2b1

Family name MIR-29 (all species)
Seed AGCACCA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-29a-2
Paralogues Tni-Mir-29-P1b1  Tni-Mir-29-P1b2  Tni-Mir-29-P1d1  Tni-Mir-29-P1d2  Tni-Mir-29-P2d1  Tni-Mir-29-P2d2 
Orthologues Aca-Mir-29-P2b  Ami-Mir-29-P2b  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2b  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2b  Cgi-Mir-29-P2  Cin-Mir-29-P2  Cli-Mir-29-P2b  Cmi-Mir-29-P2b  Cpi-Mir-29-P2b  Cpo-Mir-29-P2b  Csc-Mir-29-P2  Cte-Mir-29-P2  Dno-Mir-29-P2b  Dre-Mir-29-P2b1  Esc-Mir-29-P2  Ete-Mir-29-P2b  Gga-Mir-29-P2b  Gja-Mir-29-P2b  Gmo-Mir-29-P2b1  Hsa-Mir-29-P2b  Isc-Mir-29-P2  Lch-Mir-29-P2b  Lgi-Mir-29-P2  Loc-Mir-29-P2b  Mal-Mir-29-P2b1-v1  Mal-Mir-29-P2b1-v2  Mdo-Mir-29-P2b  Mml-Mir-29-P2b  Mmu-Mir-29-P2b  Mun-Mir-29-P2b  Npo-Mir-29-P2  Oan-Mir-29-P2b  Obi-Mir-29-P2  Ocu-Mir-29-P2b  Ovu-Mir-29-P2  Pbv-Mir-29-P2b  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Rno-Mir-29-P2b  Sha-Mir-29-P2b  Sko-Mir-29-P2  Spt-Mir-29-P2b  Spu-Mir-29-P2  Sto-Mir-29-P2b  Tgu-Mir-29-P2b  Xbo-Mir-29-P2  Xtr-Mir-29-P2b 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
Un_random: 8673485-8673545 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2b1)
Mir-29-P1b1 Un_random: 8673333-8673394 [+] UCSC Ensembl
Mir-29-P2b1 Un_random: 8673485-8673545 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGCUACAGUGUUUCUCCACCAAAAGAUGACUGAUUUCCUCUGGUGCUUAGAGCCGCCUGCAGCCUUCUAGCACCAUUUGAAAUCGGUUAUAAAACUGUGGAUCAGUGCACCUCCAGGAC
Get precursor sequence
Structure
        10          20        30        40        50        60
CAAGCUACAGUGUUUCU--|   CAAAAG            CUC       U  AGCCGCC 
                   CCAC      AUGACUGAUUUC   UGGUGCU AG       U
                   GGUG      UAUUGGCUAAAG   ACCACGA UC       G
CAGGACCUCCACGUGACUA^   UCAAAA            UUU       -  UUCCGAC 
 .       110       100        90        80         70
Deep sequencing
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CommentMIGHT be a Group 2 - check
3' NTU No
MotifsNo
Tissue expression
 +
Sp Sp Sp To
Star sequence

Tni-Mir-29-P2b1_5p*

mirBase accessionNone
Sequence
0- ACUGAUUUCCUCUGGUGCUUAG -22
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Mature sequence

Tni-Mir-29-P2b1_3p

mirBase accessionMIMAT0003054
Sequence
39- UAGCACCAUUUGAAAUCGGUUA -61
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