MirGeneDB ID | Neu-Mir-29-P2b |
Family name |
MIR-29 (all species) |
Species |
Tammar Wallaby (Notamacropus eugenii) |
MiRBase ID |
|
Paralogues |
Neu-Mir-29-P1b-v1
Neu-Mir-29-P2d
|
Orthologues |
Aca-Mir-29-P2b
Agr-Mir-29-P2
Ami-Mir-29-P2b
Asu-Mir-29-P2
Bfl-Mir-29-P2
Bla-Mir-29-P2
Bta-Mir-29-P2b
Cbr-Mir-29-P2
Cel-Mir-29-P2
Cfa-Mir-29-P2b
Cja-Mir-29-P2b
Cli-Mir-29-P2b
Cmi-Mir-29-P2b
Cpi-Mir-29-P2b
Cpo-Mir-29-P2b
Cte-Mir-29-P2
Dgr-Mir-29-P2
Dma-Mir-29-P2
Dno-Mir-29-P2b
Dpu-Mir-29-P2
Dre-Mir-29-P2b1
Eba-Mir-29-P2
Eca-Mir-29-P2b-v1
Esc-Mir-29-P2
Ete-Mir-29-P2b
Gga-Mir-29-P2b
Gja-Mir-29-P2b
Gmo-Mir-29-P2b1
Gsp-Mir-29
Hru-Mir-29-P2
Hsa-Mir-29-P2b
Laf-Mir-29-P2b
Lch-Mir-29-P2b
Lgi-Mir-29-P2
Lhy-Mir-29-P2
Llo-Mir-29-P2
Loc-Mir-29-P2b
Mal-Mir-29-P2b1-v1
Mdo-Mir-29-P2b
Mgi-Mir-29-P2
Mml-Mir-29-P2b
Mmr-Mir-29-P2b-v1
Mmu-Mir-29-P2b
Mom-Mir-29-P2
Mun-Mir-29-P2b
Npo-Mir-29-P2
Oan-Mir-29-P2b
Obi-Mir-29-P2
Ocu-Mir-29-P2b
Ofu-Mir-29-P2
Ovu-Mir-29-P2
Pab-Mir-29-P2b
Pau-Mir-29-P2
Pbv-Mir-29-P2b
Pcr-Mir-29-P2
Pdu-Mir-29-P2
Pfl-Mir-29-P2
Pmi-Mir-29-P2
Pve-Mir-29-P2
Rno-Mir-29-P2b
Rph-Mir-29-P2
Sha-Mir-29-P2b
Sko-Mir-29-P2
Sme-Mir-29-o2
Spt-Mir-29-P2b
Spu-Mir-29-P2
Sto-Mir-29-P2b
Tgu-Mir-29-P2b
Tni-Mir-29-P2b1
War-Mir-29-P2
Xbo-Mir-29-P2
Xla-Mir-29-P2b3
Xla-Mir-29-P2b4
Xtr-Mir-29-P2b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_028372415.1_mMacEug1.pri) |
CM051815.1: 119650419-119650478 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-29-P2b) |
Mir-29-P1b-v1
CM051815.1: 119649995-119650059 [+]
UCSC
Ensembl
Mir-29-P1b-v2
CM051815.1: 119649996-119650058 [+]
UCSC
Ensembl
Mir-29-P2b
CM051815.1: 119650419-119650478 [+]
UCSC
Ensembl
|
Seed |
AGCACCA |
Precursor (pre-Mir +30nt flank) |
UCAAAGGCUUCUGUGACCCCUUAGAGGAUGACUGAUUUCUUUUGGUGUUCAGAGUCAAUAUCAUUUUCUAGCACCAUUUGAAAUCGGUUAUAAUGAUUGGGGAAUAGCACCGUGUAGCAG
Get precursor sequence
|
Structure | 10 20 30 40 50
UCAAAGGCUUCUGUGAC- UAGAGG-| UUU C GUCAAU
CCCU AUGACUGAUUUC UGGUGUU AGA \
GGGG UAUUGGCUAAAG ACCACGA UCU A
GACGAUGUGCCACGAUAA UUAGUAA^ UUU - UUUACU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Ce |
Fi |
Li |
Mi |
Mi |
Mi |
Mi |
Mi |
Ov |
Se |
Se |
Te |
Te |
Te |
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Star sequence |
Neu-Mir-29-P2b_5p* |
mirBase accession | None |
Sequence |
0- ACUGAUUUCUUUUGGUGUUCAGA -23
Get sequence
|
Mature sequence |
Neu-Mir-29-P2b_3p |
mirBase accession | None |
Sequence |
38- UAGCACCAUUUGAAAUCGGUUA -60
Get sequence
|