Mir-29-P2b

MirGeneDB ID

Xtr-Mir-29-P2b

Family name

MIR-29 (all species)

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-29a

Paralogues

Xtr-Mir-29-P1b-v1 Xtr-Mir-29-P1d Xtr-Mir-29-P2d

Orthologues

Aca-Mir-29-P2b Agr-Mir-29-P2 Ami-Mir-29-P2b Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Bta-Mir-29-P2b Cbr-Mir-29-P2 Cel-Mir-29-P2 Cfa-Mir-29-P2b Cja-Mir-29-P2b Cli-Mir-29-P2b Cmi-Mir-29-P2b Cpi-Mir-29-P2b Cpo-Mir-29-P2b Cte-Mir-29-P2 Dgr-Mir-29-P2 Dma-Mir-29-P2 Dno-Mir-29-P2b Dpu-Mir-29-P2 Dre-Mir-29-P2b1 Eba-Mir-29-P2 Eca-Mir-29-P2b-v1 Esc-Mir-29-P2 Ete-Mir-29-P2b Gga-Mir-29-P2b Gja-Mir-29-P2b Gmo-Mir-29-P2b1 Gsp-Mir-29 Hru-Mir-29-P2 Hsa-Mir-29-P2b Laf-Mir-29-P2b Lch-Mir-29-P2b Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Loc-Mir-29-P2b Mal-Mir-29-P2b1-v1 Mdo-Mir-29-P2b Mgi-Mir-29-P2 Mml-Mir-29-P2b Mmr-Mir-29-P2b-v1 Mmu-Mir-29-P2b Mom-Mir-29-P2 Mun-Mir-29-P2b Neu-Mir-29-P2b Npo-Mir-29-P2 Oan-Mir-29-P2b Obi-Mir-29-P2 Ocu-Mir-29-P2b Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pab-Mir-29-P2b Pau-Mir-29-P2 Pbv-Mir-29-P2b Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rno-Mir-29-P2b Rph-Mir-29-P2 Sha-Mir-29-P2b Sko-Mir-29-P2 Sme-Mir-29-o2 Spt-Mir-29-P2b Spu-Mir-29-P2 Sto-Mir-29-P2b Tgu-Mir-29-P2b Tni-Mir-29-P2b1 War-Mir-29-P2 Xbo-Mir-29-P2 Xla-Mir-29-P2b3 Xla-Mir-29-P2b4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr3: 75124890-75124947 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2b)

Mir-29-P2b chr3: 75124890-75124947 [-] UCSC Ensembl
Mir-29-P1b-v1 chr3: 75127548-75127611 [-] UCSC Ensembl
Mir-29-P1b-v2 chr3: 75127549-75127610 [-] UCSC Ensembl

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

UAAUGGAUCAUUGCACCCUUUUAAAGGAUGACUGAUUUCUUCUGGUGUUCAGAGUCUUUUGUUUUCUAGCACCAUUUGAAAUCGGUUAUAAUGAUGGGGUAAAAAUUCAGCCUGCUGU

Get precursor sequence

Structure

        10          20        30        40        50         
UAAUGGAUCAUUGCACC--|   UAAAGG            UUC       C   GUCUU 
                   CUUU      AUGACUGAUUUC   UGGUGUU AGA     \
                   GGGG      UAUUGGCUAAAG   ACCACGA UCU     U
UGUCGUCCGACUUAAAAAU^   UAGUAA            UUU       -   UUUGU 
      110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

An	Br	Em	Em	He	Ve

Star sequence

Xtr-Mir-29-P2b_5p*

mirBase accession

None

Sequence

0- ACUGAUUUCUUCUGGUGUUCAGA -23

Get sequence

Mature sequence

Xtr-Mir-29-P2b_3p

mirBase accession

MIMAT0003656

Sequence

36- UAGCACCAUUUGAAAUCGGUUA -58

Get sequence

Proposed targets

TargetScanVert: xtr-miR-29a