Mir-29-P1d

MirGeneDB ID

Xtr-Mir-29-P1d

Family name

MIR-29 (all species)

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-29b

Paralogues

Xtr-Mir-29-P1b-v1 Xtr-Mir-29-P2b Xtr-Mir-29-P2d

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1d-v1 Aga-Mir-29-P1 Agr-Mir-29-P1 Ami-Mir-29-P1d-v1 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Bta-Mir-29-P1d7-v1 Bta-Mir-29-P1d8-v1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1d-v1 Cin-Mir-29-o1 Cja-Mir-29-P1d-v1 Cli-Mir-29-P1d-v1 Cmi-Mir-29-P1d Cpi-Mir-29-P1d-v1 Cpo-Mir-29-P1d-v1 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1d-v1 Dpu-Mir-29-P1 Dre-Mir-29-P1d1 Dre-Mir-29-P1d2 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Eca-Mir-29-P1d-v1 Esc-Mir-29-P1 Ete-Mir-29-P1d-v1 Gga-Mir-29-P1d-v1 Gja-Mir-29-P1d-v1 Gmo-Mir-29-P1d1 Gmo-Mir-29-P1d2 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Hsa-Mir-29-P1d-v1 Isc-Mir-29-P1 Laf-Mir-29-P1d-v1 Lch-Mir-29-P1d Lhy-Mir-29-P1 Llo-Mir-29-P1 Loc-Mir-29-P1d Mal-Mir-29-P1d1 Mal-Mir-29-P1d2-v1 Mdo-Mir-29-P1d-v1 Mgi-Mir-29-P1 Mml-Mir-29-P1d-v1 Mmr-Mir-29-P1d-v1 Mmu-Mir-29-P1d-v1 Mom-Mir-29-P1 Mun-Mir-29-P1d-v1 Npo-Mir-29-P1 Oan-Mir-29-P1d-v1 Obi-Mir-29-P1 Ocu-Mir-29-P1d-v1 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pab-Mir-29-P1d-v1 Pau-Mir-29-P1 Pbv-Mir-29-P1d-v1 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rno-Mir-29-P1d5-v1 Rno-Mir-29-P1d6-v1 Rph-Mir-29-P1 Sha-Mir-29-P1d-v1 Sko-Mir-29-P1 Snu-Mir-29-P1 Spt-Mir-29-P1d Spu-Mir-29-P1 Sto-Mir-29-P1d Tca-Mir-29-P1 Tgu-Mir-29-P1d-v1 Tni-Mir-29-P1d1 Tni-Mir-29-P1d2 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1 Xla-Mir-29-P1d3 Xla-Mir-29-P1d4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr2: 48073409-48073473 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P1d)

Mir-29-P1d chr2: 48073409-48073473 [+] UCSC Ensembl
Mir-29-P2d chr2: 48076550-48076610 [+] UCSC Ensembl

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

CCUCCAUAACAUUAAAAUCUUUUCCCGGAAGCUGGUUUCUUGUGGUGACUUAGAUUUAUCCAUCGCUGCAUCUAGCACCAUUUGAAAUCAGUGUUCUAGGAGUAAGAAAAUCAGCCUUUGCCCGC

Get precursor sequence

Structure

        10         20         30         40        50        60  
CCUCCAUAACAUUAAAA-    -    CG   -|        UU      A  U   UUUAUCC 
                  UCUU UUCC  GAA GCUGGUUUC  GUGGUG CU AGA       A
                  AGAA GAGG  CUU UGACUAAAG  UACCAC GA UCU       U
CGCCCGUUUCCGACUAAA    U    AU   G^        UU      -  -   ACGUCGC 
   120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Star sequence

Xtr-Mir-29-P1d_5p*

mirBase accession

None

Sequence

0- GCUGGUUUCUUGUGGUGACUUAGA -24

Get sequence

Mature sequence

Xtr-Mir-29-P1d_3p

mirBase accession

MIMAT0003573

Sequence

42- UAGCACCAUUUGAAAUCAGUGUU -65

Get sequence

Proposed targets

TargetScanVert: xtr-miR-29b