MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-29-P1d5-v1

Family name MIR-29 (all species)
Seed AGCACCA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-29b-2
Paralogues Rno-Mir-29-P1b-v1  Rno-Mir-29-P1b-v2  Rno-Mir-29-P1d5-v2  Rno-Mir-29-P1d6-v1  Rno-Mir-29-P1d6-v2  Rno-Mir-29-P2b  Rno-Mir-29-P2d5  Rno-Mir-29-P2d6 
Orthologues Aae-Mir-29-P1  Aca-Mir-29-P1d-v1  Aca-Mir-29-P1d-v2  Ami-Mir-29-P1d-v1  Ami-Mir-29-P1d-v2  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bla-Mir-29-P1  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cfa-Mir-29-P1d-v1  Cfa-Mir-29-P1d-v2  Cgi-Mir-29-P1  Cli-Mir-29-P1d-v1  Cli-Mir-29-P1d-v2  Cmi-Mir-29-P1d  Cpi-Mir-29-P1d-v1  Cpi-Mir-29-P1d-v2  Cpo-Mir-29-P1d-v1  Cpo-Mir-29-P1d-v2  Cte-Mir-29-P1  Dan-Mir-29-P1  Dme-Mir-29-P1  Dmo-Mir-29-P1  Dno-Mir-29-P1d-v1  Dno-Mir-29-P1d-v2  Dsi-Mir-29-P1  Dya-Mir-29-P1  Esc-Mir-29-P1  Ete-Mir-29-P1d-v1  Ete-Mir-29-P1d-v2  Gga-Mir-29-P1d-v1  Gga-Mir-29-P1d-v2  Gja-Mir-29-P1d-v1  Gja-Mir-29-P1d-v2  Hme-Mir-29-P1  Hsa-Mir-29-P1d-v1  Hsa-Mir-29-P1d-v2  Lch-Mir-29-P1d  Loc-Mir-29-P1d  Mdo-Mir-29-P1d-v1  Mdo-Mir-29-P1d-v2  Mml-Mir-29-P1d-v1  Mml-Mir-29-P1d-v2  Mmu-Mir-29-P1d-v1  Mmu-Mir-29-P1d-v2  Mun-Mir-29-P1d-v1  Mun-Mir-29-P1d-v2  Npo-Mir-29-P1  Oan-Mir-29-P1d-v1  Oan-Mir-29-P1d-v2  Obi-Mir-29-P1  Ocu-Mir-29-P1d-v1  Ocu-Mir-29-P1d-v2  Ovu-Mir-29-P1  Pbv-Mir-29-P1d-v1  Pbv-Mir-29-P1d-v2  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Sha-Mir-29-P1d-v1  Sha-Mir-29-P1d-v2  Sko-Mir-29-P1  Spt-Mir-29-P1d  Spu-Mir-29-P1  Sto-Mir-29-P1d  Tca-Mir-29-P1  Tgu-Mir-29-P1d-v1  Tgu-Mir-29-P1d-v2  Xbo-Mir-29-P1  Xtr-Mir-29-P1d 
Node of Origin (locus) R. norvegicus
Node of Origin (family) Bilateria
Genome context
(rn6)
chr13: 113782066-113782130 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P1d5-v1)
Mir-29-P1d5-v1 chr13: 113782066-113782130 [+] UCSC Ensembl
Mir-29-P1d5-v2 chr13: 113782067-113782129 [+] UCSC Ensembl
Mir-29-P2d5 chr13: 113782602-113782659 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCUUCAGUGAGAUCCUCUUCUUCUGGAAGCUGGUUUCACAUGGUGGCUUAGAUUUUUCCAUCUUUGUAUCUAGCACCAUUUGAAAUCAGUGUUUUAGGAGUAAGAAUUGCAGCACAGCAGAGG
Get precursor sequence
Structure
        10         20         30         40        50        60  
UUUCUUCAGUGAGAUCC-    -         -|         C      G  U   UUUUUCC 
                  UCUU CUUCUGGAA GCUGGUUUCA AUGGUG CU AGA       A
                  AGAA GAGGAUUUU UGACUAAAGU UACCAC GA UCU       U
GGAGACGACACGACGUUA    U         G^         U      -  -   AUGUUUC 
   120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-29-P1d5-v1_5p*

mirBase accessionMIMAT0004717
Sequence
0- GCUGGUUUCACAUGGUGGCUUAGA -24
Get sequence
Mature sequence

Rno-Mir-29-P1d5-v1_3p

mirBase accessionMIMAT0000801
Sequence
42- UAGCACCAUUUGAAAUCAGUGUU -65
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