MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-29-P1d5

Family name MIR-29 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-29b-3
Paralogues Rno-Mir-29-P1b-v1  Rno-Mir-29-P1d5-v1  Rno-Mir-29-P1d6-v1  Rno-Mir-29-P2b  Rno-Mir-29-P2d5  Rno-Mir-29-P2d6 
Orthologues Aae-Mir-29-P1  Aca-Mir-29-P1d-v1  Aga-Mir-29-P1  Agr-Mir-29-P1  Ami-Mir-29-P1d-v1  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bla-Mir-29-P1  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cfa-Mir-29-P1d-v1  Cin-Mir-29-o1  Cja-Mir-29-P1d-v1  Cli-Mir-29-P1d-v1  Cmi-Mir-29-P1d  Cpi-Mir-29-P1d-v1  Cpo-Mir-29-P1d-v1  Csc-Mir-29-P1  Cte-Mir-29-P1  Dan-Mir-29-P1  Dgr-Mir-29-P1  Dlo-Mir-29-P1  Dma-Mir-29-P1  Dme-Mir-29-P1  Dmo-Mir-29-P1  Dno-Mir-29-P1d-v1  Dpu-Mir-29-P1  Dsi-Mir-29-P1  Dya-Mir-29-P1  Eba-Mir-29-P1  Eca-Mir-29-P1d-v1  Esc-Mir-29-P1  Ete-Mir-29-P1d-v1  Gga-Mir-29-P1d-v1  Gja-Mir-29-P1d-v1  Gpa-Mir-29-P1  Gsp-Mir-29  Hme-Mir-29-P1  Hru-Mir-29-P1  Hsa-Mir-29-P1d-v1  Isc-Mir-29-P1  Laf-Mir-29-P1d-v1  Lch-Mir-29-P1d  Lhy-Mir-29-P1  Llo-Mir-29-P1  Loc-Mir-29-P1d  Mdo-Mir-29-P1d-v1  Mgi-Mir-29-P1  Mml-Mir-29-P1d-v1  Mmr-Mir-29-P1d-v1  Mmu-Mir-29-P1d-v1  Mom-Mir-29-P1  Mun-Mir-29-P1d-v1  Npo-Mir-29-P1  Oan-Mir-29-P1d-v1  Obi-Mir-29-P1  Ocu-Mir-29-P1d-v1  Ofu-Mir-29-P1  Ovu-Mir-29-P1  Pab-Mir-29-P1d-v1  Pau-Mir-29-P1  Pbv-Mir-29-P1d-v1  Pcr-Mir-29-P1  Pdu-Mir-29-P1  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Pve-Mir-29-P1  Rph-Mir-29-P1  Sha-Mir-29-P1d-v1  Sko-Mir-29-P1  Snu-Mir-29-P1  Spt-Mir-29-P1d  Spu-Mir-29-P1  Sto-Mir-29-P1d  Tca-Mir-29-P1  Tgu-Mir-29-P1d-v1  Tur-Mir-29-P1  War-Mir-29-P1  Xbo-Mir-29-P1  Xtr-Mir-29-P1d 
Node of Origin (locus) R. norvegicus
Node of Origin (family) Bilateria
Genome context
(rn6)		 chr13: 113782067-113782129 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P1d5-v2)		 Mir-29-P1d5-v1 chr13: 113782066-113782130 [+] UCSC Ensembl
Mir-29-P1d5-v2 chr13: 113782067-113782129 [+] UCSC Ensembl
Mir-29-P2d5 chr13: 113782602-113782659 [+] UCSC Ensembl
Variant

Rno-Mir-29-P1d5-v2
Seed UAGCACC
Precursor
(pre-Mir +30nt flank)		 
UUCUUCAGUGAGAUCCUCUUCUUCUGGAAGCUGGUUUCACAUGGUGGCUUAGAUUUUUCCAUCUUUGUAUCUAGCACCAUUUGAAAUCAGUGUUUUAGGAGUAAGAAUUGCAGCACAGCAGAG
Get precursor sequence
Structure
        10         20          30        40        50        60 
UUCUUCAGUGAGAUCCU-   -         -|         C      G  U    UUUUCC 
                  CUU CUUCUGGAA GCUGGUUUCA AUGGUG CU AGAU      A
                  GAA GAGGAUUUU UGACUAAAGU UACCAC GA UCUA      U
GAGACGACACGACGUUAA   U         G^         U      -  -    UGUUUC 
 120       110       100        90        80          70
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-29-P1d5-v2_5p*
mirBase accessionMIMAT0004717
Sequence 
0- CUGGUUUCACAUGGUGGCUUAGAU -24
Get sequence
Mature sequence

Rno-Mir-29-P1d5-v2_3p
mirBase accessionMIMAT0000801
Sequence 
40- CUAGCACCAUUUGAAAUCAGUGU -63
Get sequence
Variant

Rno-Mir-29-P1d5-v1
Seed AGCACCA
Precursor
(pre-Mir +30nt flank)		 
UUUCUUCAGUGAGAUCCUCUUCUUCUGGAAGCUGGUUUCACAUGGUGGCUUAGAUUUUUCCAUCUUUGUAUCUAGCACCAUUUGAAAUCAGUGUUUUAGGAGUAAGAAUUGCAGCACAGCAGAGG
Get precursor sequence
Structure
        10         20         30         40        50        60  
UUUCUUCAGUGAGAUCC-    -         -|         C      G  U   UUUUUCC 
                  UCUU CUUCUGGAA GCUGGUUUCA AUGGUG CU AGA       A
                  AGAA GAGGAUUUU UGACUAAAGU UACCAC GA UCU       U
GGAGACGACACGACGUUA    U         G^         U      -  -   AUGUUUC 
   120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-29-P1d5-v1_5p*
mirBase accessionMIMAT0004717
Sequence 
0- GCUGGUUUCACAUGGUGGCUUAGA -24
Get sequence
Mature sequence

Rno-Mir-29-P1d5-v1_3p
mirBase accessionMIMAT0000801
Sequence 
42- UAGCACCAUUUGAAAUCAGUGUU -65
Get sequence