Mir-29-P1b-v1

MirGeneDB ID

Rno-Mir-29-P1b

Family name

MIR-29 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-29b-1

Paralogues

Rno-Mir-29-P1d5-v1 Rno-Mir-29-P1d6-v1 Rno-Mir-29-P2b Rno-Mir-29-P2d5 Rno-Mir-29-P2d6

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1b-v1 Aga-Mir-29-P1 Agr-Mir-29-P1 Ami-Mir-29-P1b-v1 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Bta-Mir-29-P1b-v1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1b-v1 Cin-Mir-29-o1 Cja-Mir-29-P1b-v1 Cli-Mir-29-P1b-v1 Cmi-Mir-29-P1b Cpi-Mir-29-P1b-v1 Cpo-Mir-29-P1b-v1 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1b-v1 Dpu-Mir-29-P1 Dre-Mir-29-P1b1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Eca-Mir-29-P1b-v1 Esc-Mir-29-P1 Ete-Mir-29-P1b-v1 Gga-Mir-29-P1b-v1 Gja-Mir-29-P1b-v1 Gmo-Mir-29-P1b1 Gmo-Mir-29-P1b2 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Hsa-Mir-29-P1b-v1 Isc-Mir-29-P1 Laf-Mir-29-P1b-v1 Lch-Mir-29-P1b Lhy-Mir-29-P1 Llo-Mir-29-P1 Loc-Mir-29-P1b-v1 Mal-Mir-29-P1b1-v1 Mal-Mir-29-P1b2-v1 Mdo-Mir-29-P1b-v1 Mgi-Mir-29-P1 Mml-Mir-29-P1b-v1 Mmr-Mir-29-P1b-v1 Mmu-Mir-29-P1b-v1 Mom-Mir-29-P1 Mun-Mir-29-P1b Neu-Mir-29-P1b-v1 Npo-Mir-29-P1 Oan-Mir-29-P1b-v1 Obi-Mir-29-P1 Ocu-Mir-29-P1b-v1 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pab-Mir-29-P1b-v1 Pau-Mir-29-P1 Pbv-Mir-29-P1b-v1 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rph-Mir-29-P1 Sha-Mir-29-P1b-v1 Sko-Mir-29-P1 Snu-Mir-29-P1 Spt-Mir-29-P1b Spu-Mir-29-P1 Sto-Mir-29-P1b Tca-Mir-29-P1 Tgu-Mir-29-P1b-v1 Tni-Mir-29-P1b1 Tni-Mir-29-P1b2 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1 Xla-Mir-29-P1b3 Xla-Mir-29-P1b4 Xtr-Mir-29-P1b-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr4: 58344318-58344381 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P1b-v1)

Mir-29-P2b chr4: 58343944-58344003 [-] UCSC Ensembl
Mir-29-P1b-v1 chr4: 58344318-58344381 [-] UCSC Ensembl
Mir-29-P1b-v2 chr4: 58344319-58344380 [-] UCSC Ensembl

Variant

Rno-Mir-29-P1b-v1

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

GGACGAGAACAGACAAAGCUUCUUCAGGAAGCUGGUUUCAUAUGGUGGUUUAGAUUUAAAUAGUGAUUGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGUGGAGAACAACUUCGCUGCCGACCA

Get precursor sequence

Structure

        10          20        30         40        50        60  
GGACGAGAACAGACAAAG--    U       -|         U      GU     UUUAAAU 
                    CUUC UCAGGAA GCUGGUUUCA AUGGUG  UUAGA       \
                    GAGG GGUUCUU UGACUAAAGU UACCAC  GAUCU       A
ACCAGCCGUCGCUUCAACAA    U       G^         U      --     GUUAGUG 
  120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-29-P1b-v1_5p*

mirBase accession

MIMAT0005445

Sequence

0- GCUGGUUUCAUAUGGUGGUUUAGA -24

Get sequence

Proposed targets

microrna.org: MIMAT0005445
TargetScanVert: rno-miR-29b-1-5p
miRDB: MIMAT0005445

Mature sequence

Rno-Mir-29-P1b-v1_3p

mirBase accession

MIMAT0000801

Sequence

41- UAGCACCAUUUGAAAUCAGUGUU -64

Get sequence

Variant

Rno-Mir-29-P1b-v2

Seed

UAGCACC

Precursor
(pre-Mir +30nt flank)

GACGAGAACAGACAAAGCUUCUUCAGGAAGCUGGUUUCAUAUGGUGGUUUAGAUUUAAAUAGUGAUUGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGUGGAGAACAACUUCGCUGCCGACC

Get precursor sequence

Structure

        10          20         30        40        50        60 
GACGAGAACAGACAAAG--    U       -|         U      GU      UUAAAU 
                   CUUC UCAGGAA GCUGGUUUCA AUGGUG  UUAGAU      \
                   GAGG GGUUCUU UGACUAAAGU UACCAC  GAUCUG      A
CCAGCCGUCGCUUCAACAA    U       G^         U      --      UUAGUG 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-29-P1b-v2_5p*

mirBase accession

MIMAT0005445

Sequence

0- CUGGUUUCAUAUGGUGGUUUAGAU -24

Get sequence

Proposed targets

microrna.org: MIMAT0005445
TargetScanVert: rno-miR-29b-1-5p
miRDB: MIMAT0005445

Mature sequence

Rno-Mir-29-P1b-v2_3p

mirBase accession

MIMAT0000801

Sequence

39- CUAGCACCAUUUGAAAUCAGUGU -62

Get sequence