Mir-29-P1b

MirGeneDB ID

Cmi-Mir-29-P1b

Family name

MIR-29 (all species)

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-29-P1d Cmi-Mir-29-P2a-v1 Cmi-Mir-29-P2b Cmi-Mir-29-P2d

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1b-v1 Aga-Mir-29-P1 Agr-Mir-29-P1 Ami-Mir-29-P1b-v1 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Bta-Mir-29-P1b-v1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1b-v1 Cin-Mir-29-o1 Cja-Mir-29-P1b-v1 Cli-Mir-29-P1b-v1 Cpi-Mir-29-P1b-v1 Cpo-Mir-29-P1b-v1 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1b-v1 Dpu-Mir-29-P1 Dre-Mir-29-P1b1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Eca-Mir-29-P1b-v1 Esc-Mir-29-P1 Ete-Mir-29-P1b-v1 Gga-Mir-29-P1b-v1 Gja-Mir-29-P1b-v1 Gmo-Mir-29-P1b1 Gmo-Mir-29-P1b2 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Hsa-Mir-29-P1b-v1 Isc-Mir-29-P1 Laf-Mir-29-P1b-v1 Lch-Mir-29-P1b Lhy-Mir-29-P1 Llo-Mir-29-P1 Loc-Mir-29-P1b-v1 Mal-Mir-29-P1b1-v1 Mal-Mir-29-P1b2-v1 Mdo-Mir-29-P1b-v1 Mgi-Mir-29-P1 Mml-Mir-29-P1b-v1 Mmr-Mir-29-P1b-v1 Mmu-Mir-29-P1b-v1 Mom-Mir-29-P1 Mun-Mir-29-P1b Neu-Mir-29-P1b-v1 Npo-Mir-29-P1 Oan-Mir-29-P1b-v1 Obi-Mir-29-P1 Ocu-Mir-29-P1b-v1 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pab-Mir-29-P1b-v1 Pau-Mir-29-P1 Pbv-Mir-29-P1b-v1 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rno-Mir-29-P1b-v1 Rph-Mir-29-P1 Sha-Mir-29-P1b-v1 Sko-Mir-29-P1 Snu-Mir-29-P1 Spt-Mir-29-P1b Spu-Mir-29-P1 Sto-Mir-29-P1b Tca-Mir-29-P1 Tgu-Mir-29-P1b-v1 Tni-Mir-29-P1b1 Tni-Mir-29-P1b2 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1 Xla-Mir-29-P1b3 Xla-Mir-29-P1b4 Xtr-Mir-29-P1b-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635871.1: 459536-459598 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P1b)

Mir-29-P2b KI635871.1: 457360-457419 [-] UCSC Ensembl
Mir-29-P1b KI635871.1: 459536-459598 [-] UCSC Ensembl

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

CGAAGAAGUCUUCACAACUUCUCCAAGGAGCUGGUUUCCUAUGGUGGUUUAGAUGUAACUCAGCUGUGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGAGAAAGACUGUCAGCUCACUGCCGG

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Structure

        10           20         30        40        50        60 
CGAAGAAGUCUUCACAAC---           -|        CU      GU     UGUAACU 
                     UUCUCCAAGGA GCUGGUUUC  AUGGUG  UUAGA       \
                     AAGAGGUUCUU UGACUAAAG  UACCAC  GAUCU       C
GGCCGUCACUCGACUGUCAGA           G^        UU      --     GUGUCGA 
 120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-29-P1b_5p*

mirBase accession

None

Sequence

0- CUGGUUUCCUAUGGUGGUUUAGA -23

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Mature sequence

Cmi-Mir-29-P1b_3p

mirBase accession

None

Sequence

40- UAGCACCAUUUGAAAUCAGUGUU -63

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