Mir-29-P1b1

MirGeneDB ID

Dre-Mir-29-P1b1

Family name

MIR-29 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-29b-2

Paralogues

Dre-Mir-29-P1d1 Dre-Mir-29-P1d2 Dre-Mir-29-P2b1 Dre-Mir-29-P2d2

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1b-v1 Aga-Mir-29-P1 Agr-Mir-29-P1 Ami-Mir-29-P1b-v1 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Bta-Mir-29-P1b-v1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1b-v1 Cin-Mir-29-o1 Cja-Mir-29-P1b-v1 Cli-Mir-29-P1b-v1 Cmi-Mir-29-P1b Cpi-Mir-29-P1b-v1 Cpo-Mir-29-P1b-v1 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1b-v1 Dpu-Mir-29-P1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Eca-Mir-29-P1b-v1 Esc-Mir-29-P1 Ete-Mir-29-P1b-v1 Gga-Mir-29-P1b-v1 Gja-Mir-29-P1b-v1 Gmo-Mir-29-P1b1 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Hsa-Mir-29-P1b-v1 Isc-Mir-29-P1 Laf-Mir-29-P1b-v1 Lch-Mir-29-P1b Lhy-Mir-29-P1 Llo-Mir-29-P1 Loc-Mir-29-P1b-v1 Mal-Mir-29-P1b1-v1 Mdo-Mir-29-P1b-v1 Mgi-Mir-29-P1 Mml-Mir-29-P1b-v1 Mmr-Mir-29-P1b-v1 Mmu-Mir-29-P1b-v1 Mom-Mir-29-P1 Mun-Mir-29-P1b Neu-Mir-29-P1b-v1 Npo-Mir-29-P1 Oan-Mir-29-P1b-v1 Obi-Mir-29-P1 Ocu-Mir-29-P1b-v1 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pab-Mir-29-P1b-v1 Pau-Mir-29-P1 Pbv-Mir-29-P1b-v1 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rno-Mir-29-P1b-v1 Rph-Mir-29-P1 Sha-Mir-29-P1b-v1 Sko-Mir-29-P1 Snu-Mir-29-P1 Spt-Mir-29-P1b Spu-Mir-29-P1 Sto-Mir-29-P1b Tca-Mir-29-P1 Tgu-Mir-29-P1b-v1 Tni-Mir-29-P1b1 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1 Xtr-Mir-29-P1b-v1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr4: 11608208-11608269 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P1b1)

Mir-29-P2b1 chr4: 11606782-11606841 [-] UCSC Ensembl
Mir-29-P1b1 chr4: 11608208-11608269 [-] UCSC Ensembl

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

GUCGACUCUUUUGGACUCUUCCUCCAGAUGCUGGUUUCACAUGGUGGUUUAGAUGUGUUCUACCAAAGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGGGAGGGAUUUGCACUGGAUUGUGU

Get precursor sequence

Structure

        10          20         30        40        50        60 
GUCGACUCUUUUGGACU--       C  -|           C      GU     UGUGUUC 
                   CUUCCUC AG AUGCUGGUUUCA AUGGUG  UUAGA       \
                   GGAGGGG UC UGUGACUAAAGU UACCAC  GAUCU       U
UGUGUUAGGUCACGUUUAG       U  U^           U      --     GAAACCA 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-29-P1b1_5p*

mirBase accession

None

Sequence

0- CUGGUUUCACAUGGUGGUUUAGA -23

Get sequence

Mature sequence

Dre-Mir-29-P1b1_3p

mirBase accession

MIMAT0001801

Sequence

40- UAGCACCAUUUGAAAUCAGUGU -62

Get sequence

Proposed targets

TargetScanFish: dre-miR-29b