MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-29-P2d2

Family name MIR-29 (all species)
Seed AGCACCA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-29a-1
Paralogues Tni-Mir-29-P1b1  Tni-Mir-29-P1b2  Tni-Mir-29-P1d1  Tni-Mir-29-P1d2  Tni-Mir-29-P2b1  Tni-Mir-29-P2d1 
Orthologues Aca-Mir-29-P2d  Ami-Mir-29-P2d  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2d2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cgi-Mir-29-P2  Cin-Mir-29-P2  Cli-Mir-29-P2d  Cmi-Mir-29-P2d  Cpi-Mir-29-P2d  Cpo-Mir-29-P2d  Csc-Mir-29-P2  Cte-Mir-29-P2  Dno-Mir-29-P2d  Dre-Mir-29-P2d2  Esc-Mir-29-P2  Ete-Mir-29-P2d  Gga-Mir-29-P2d  Gja-Mir-29-P2d  Gmo-Mir-29-P2d2  Hsa-Mir-29-P2d  Isc-Mir-29-P2  Lch-Mir-29-P2d  Lgi-Mir-29-P2  Loc-Mir-29-P2d-v1  Loc-Mir-29-P2d-v2  Mal-Mir-29-P2d2  Mdo-Mir-29-P2d  Mml-Mir-29-P2d  Mmu-Mir-29-P2d  Mun-Mir-29-P2d  Npo-Mir-29-P2  Oan-Mir-29-P2d  Obi-Mir-29-P2  Ocu-Mir-29-P2d  Ovu-Mir-29-P2  Pbv-Mir-29-P2d  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Sha-Mir-29-P2d  Sko-Mir-29-P2  Spt-Mir-29-P2d  Spu-Mir-29-P2  Sto-Mir-29-P2d  Tgu-Mir-29-P2d  Xbo-Mir-29-P2  Xtr-Mir-29-P2d 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 9: 9583409-9583468 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2d2)		 Mir-29-P1d2 9: 9583207-9583267 [+] UCSC Ensembl
Mir-29-P2d2 9: 9583409-9583468 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCAAGCUUGUUGUCCUCAAGUCAAGGUUGACCGAUUUCUUUUGGUGUUCAGAGUCCAAUUCUGUUUCUAGCACCAUUUGAAAUCGGUUACAGUGAAGGACAUUUGUCAUCAAAUGCGCU
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Structure
        10        20           30        40        50          
CCCAAGCUUGUUGUCCUCAAG---|  AG  U          UUU       C   GUCCAA 
                        UCA  GU GACCGAUUUC   UGGUGUU AGA      \
                        AGU  CA UUGGCUAAAG   ACCACGA UCU      U
UCGCGUAAACUACUGUUUACAGGA^  GA  -          UUU       -   UUGUCU 
.       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-29-P2d2_5p*
mirBase accessionNone
Sequence 
0- ACCGAUUUCUUUUGGUGUUCAGA -23
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Mature sequence

Tni-Mir-29-P2d2_3p
mirBase accessionMIMAT0003054
Sequence 
38- UAGCACCAUUUGAAAUCGGUUA -60
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