Mir-29-P2d

MirGeneDB ID

Cja-Mir-29-P2d

Family name

MIR-29 (all species)

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-29-P1b-v1 Cja-Mir-29-P1d-v1 Cja-Mir-29-P2b

Orthologues

Aca-Mir-29-P2d Agr-Mir-29-P2 Ami-Mir-29-P2d Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Bta-Mir-29-P2d7 Bta-Mir-29-P2d8 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cfa-Mir-29-P2d7 Cfa-Mir-29-P2d8 Cli-Mir-29-P2d Cmi-Mir-29-P2d Cpi-Mir-29-P2d Cpo-Mir-29-P2d Cte-Mir-29-P2 Dgr-Mir-29-P2 Dma-Mir-29-P2 Dno-Mir-29-P2d Dpu-Mir-29-P2 Dre-Mir-29-P2d2 Eba-Mir-29-P2 Eca-Mir-29-P2d7 Eca-Mir-29-P2d8 Esc-Mir-29-P2 Ete-Mir-29-P2d Gga-Mir-29-P2d Gja-Mir-29-P2d Gmo-Mir-29-P2d1 Gmo-Mir-29-P2d2 Gsp-Mir-29 Hru-Mir-29-P2 Hsa-Mir-29-P2d Laf-Mir-29-P2d Lch-Mir-29-P2d Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Loc-Mir-29-P2d-v1 Mal-Mir-29-P2d1 Mal-Mir-29-P2d2 Mdo-Mir-29-P2d Mgi-Mir-29-P2 Mml-Mir-29-P2d Mmr-Mir-29-P2d Mmu-Mir-29-P2d Mom-Mir-29-P2 Mun-Mir-29-P2d Neu-Mir-29-P2d Npo-Mir-29-P2 Oan-Mir-29-P2d Obi-Mir-29-P2 Ocu-Mir-29-P2d Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pab-Mir-29-P2d Pau-Mir-29-P2 Pbv-Mir-29-P2d Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rno-Mir-29-P2d5 Rno-Mir-29-P2d6 Rph-Mir-29-P2 Sha-Mir-29-P2d Sko-Mir-29-P2 Sme-Mir-29-o2 Spt-Mir-29-P2d Spu-Mir-29-P2 Sto-Mir-29-P2d Tgu-Mir-29-P2d Tni-Mir-29-P2d1 Tni-Mir-29-P2d2 War-Mir-29-P2 Xbo-Mir-29-P2 Xla-Mir-29-P2d3 Xla-Mir-29-P2d4 Xtr-Mir-29-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021933.1: 31474460-31474517 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2d)

Mir-29-P2d CM021933.1: 31474460-31474517 [-] UCSC Ensembl
Mir-29-P1d-v1 CM021933.1: 31475042-31475105 [-] UCSC Ensembl
Mir-29-P1d-v2 CM021933.1: 31475043-31475104 [-] UCSC Ensembl

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

GCACCACUGGCCCAUCUCUUACACAGGCUGACCGAUUUCUCCUGGUGUUCAGAGUCUGUUUUUGUCUAGCACCAUUUGAAAUCGGUUAUGAUGUAGGGGGAAAAGCAGCAGCCUCGAA

Get precursor sequence

Structure

        10            20         30        40        50         
GCACCACUGGCCCAUCU----      -| GGC           UCC       C  AGUCUG 
                     CUUACA CA   UGACCGAUUUC   UGGUGUU AG      \
                     GGAUGU GU   AUUGGCUAAAG   ACCACGA UC      U
AAGCUCCGACGACGAAAAGGG      A^ ---           UUU       -  UGUUUU 
      110       100        90           80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Cja-Mir-29-P2d_5p*

mirBase accession

None

Sequence

0- ACCGAUUUCUCCUGGUGUUCAG -22

Get sequence

Mature sequence

Cja-Mir-29-P2d_3p

mirBase accession

None

Sequence

36- UAGCACCAUUUGAAAUCGGUUA -58

Get sequence