MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-29-P2d4

Family name MIR-29 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-29c
Paralogues Xla-Mir-29-P1b3  Xla-Mir-29-P1b4  Xla-Mir-29-P1d3  Xla-Mir-29-P1d4  Xla-Mir-29-P2b3  Xla-Mir-29-P2b4  Xla-Mir-29-P2d3 
Orthologues Aca-Mir-29-P2d  Agr-Mir-29-P2  Ami-Mir-29-P2d  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cja-Mir-29-P2d  Cli-Mir-29-P2d  Cmi-Mir-29-P2d  Cpi-Mir-29-P2d  Cpo-Mir-29-P2d  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dno-Mir-29-P2d  Dpu-Mir-29-P2  Eba-Mir-29-P2  Esc-Mir-29-P2  Ete-Mir-29-P2d  Gga-Mir-29-P2d  Gja-Mir-29-P2d  Gsp-Mir-29  Hru-Mir-29-P2  Hsa-Mir-29-P2d  Laf-Mir-29-P2d  Lch-Mir-29-P2d  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Loc-Mir-29-P2d-v1  Mdo-Mir-29-P2d  Mgi-Mir-29-P2  Mml-Mir-29-P2d  Mmr-Mir-29-P2d  Mmu-Mir-29-P2d  Mom-Mir-29-P2  Mun-Mir-29-P2d  Neu-Mir-29-P2d  Npo-Mir-29-P2  Oan-Mir-29-P2d  Obi-Mir-29-P2  Ocu-Mir-29-P2d  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pab-Mir-29-P2d  Pau-Mir-29-P2  Pbv-Mir-29-P2d  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rph-Mir-29-P2  Sha-Mir-29-P2d  Sko-Mir-29-P2  Sme-Mir-29-o2  Spt-Mir-29-P2d  Spu-Mir-29-P2  Sto-Mir-29-P2d  Tgu-Mir-29-P2d  War-Mir-29-P2  Xbo-Mir-29-P2  Xtr-Mir-29-P2d 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030727.1: 41104518-41104578 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2d4)		 Mir-29-P1d4 NC_030727.1: 41101114-41101178 [+] UCSC Ensembl
Mir-29-P2d4 NC_030727.1: 41104518-41104578 [+] UCSC Ensembl
Seed AGCACCA
Precursor
(pre-Mir +30nt flank)		 
CUAAUAAAAAAAGGUCCCUUACACAGGAUGACCGAUCUCUCUUGGUGUUCAGAGGCUCAGGUCUUCAUCUAGCACCAUUUGAAAUCGGUUAUAAUGUAAGGUGAAUGGCAACAAAACUGCA
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Structure
        10            20        30        40        50        60
CUAAUAAAAAAAGGUCC----|     CAGG         C  UCU       C   GGCUCA 
                     CUUACA    AUGACCGAU UC   UGGUGUU AGA      G
                     GAAUGU    UAUUGGCUA AG   ACCACGA UCU      G
ACGUCAAAACAACGGUAAGUG^     AA--         A  UUU       -   ACUUCU 
 .       110       100          90        80         70
Deep sequencing
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CommentThere is a second Drosha cut -2 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Eg Em Em He Ki Re St St
Star sequence

Xla-Mir-29-P2d4_5p* (predicted)
mirBase accessionMIMAT0046564
Sequence 
0- ACCGAUCUCUCUUGGUGUUCAGA -23
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Mature sequence

Xla-Mir-29-P2d4_3p
mirBase accessionMIMAT0046565
Sequence 
39- UAGCACCAUUUGAAAUCGGUUA -61
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