Mir-29-P2d2

MirGeneDB ID

Mal-Mir-29-P2d2

Family name

MIR-29 (all species)

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-29-P1b1-v1 Mal-Mir-29-P1b2-v1 Mal-Mir-29-P1d1 Mal-Mir-29-P1d2-v1 Mal-Mir-29-P2b1-v1 Mal-Mir-29-P2d1

Orthologues

Aca-Mir-29-P2d Agr-Mir-29-P2 Ami-Mir-29-P2d Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cja-Mir-29-P2d Cli-Mir-29-P2d Cmi-Mir-29-P2d Cpi-Mir-29-P2d Cpo-Mir-29-P2d Cte-Mir-29-P2 Dgr-Mir-29-P2 Dma-Mir-29-P2 Dno-Mir-29-P2d Dpu-Mir-29-P2 Dre-Mir-29-P2d2 Eba-Mir-29-P2 Esc-Mir-29-P2 Ete-Mir-29-P2d Gga-Mir-29-P2d Gja-Mir-29-P2d Gmo-Mir-29-P2d2 Gsp-Mir-29 Hru-Mir-29-P2 Hsa-Mir-29-P2d Laf-Mir-29-P2d Lch-Mir-29-P2d Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Loc-Mir-29-P2d-v1 Mdo-Mir-29-P2d Mgi-Mir-29-P2 Mml-Mir-29-P2d Mmr-Mir-29-P2d Mmu-Mir-29-P2d Mom-Mir-29-P2 Mun-Mir-29-P2d Neu-Mir-29-P2d Npo-Mir-29-P2 Oan-Mir-29-P2d Obi-Mir-29-P2 Ocu-Mir-29-P2d Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pab-Mir-29-P2d Pau-Mir-29-P2 Pbv-Mir-29-P2d Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rph-Mir-29-P2 Sha-Mir-29-P2d Sko-Mir-29-P2 Sme-Mir-29-o2 Spt-Mir-29-P2d Spu-Mir-29-P2 Sto-Mir-29-P2d Tgu-Mir-29-P2d Tni-Mir-29-P2d2 War-Mir-29-P2 Xbo-Mir-29-P2 Xtr-Mir-29-P2d

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884882.1: 158998-159057 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2d2)

Mir-29-P2d2 KV884882.1: 158998-159057 [-] UCSC Ensembl
Mir-29-P1d2-v1 KV884882.1: 159241-159302 [-] UCSC Ensembl
Mir-29-P1d2-v2 KV884882.1: 159241-159302 [-] UCSC Ensembl

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

CUCAAGCUUUUUGUCCUCUCUCCAAGGUUGACCGAUUUCUUUUGGUGUUCAGAGUCUGCUUUUGUUUCUAGCACCAUUUGAAAUCGGUUACAGUGAAGGACAGAUCUCAUCUUACGCUGA

Get precursor sequence

Structure

        10           20        30        40        50          
CUCAAGCUUUUUGUCCUC---|  C  AG  U          UUU       C   GUCUGC 
                     UCU CA  GU GACCGAUUUC   UGGUGUU AGA      \
                     GGA GU  CA UUGGCUAAAG   ACCACGA UCU      U
AGUCGCAUUCUACUCUAGACA^  A  GA  -          UUU       -   UUGUUU 
.       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Star sequence

Mal-Mir-29-P2d2_5p*

mirBase accession

None

Sequence

0- ACCGAUUUCUUUUGGUGUUCAGA -23

Get sequence

Mature sequence

Mal-Mir-29-P2d2_3p

mirBase accession

None

Sequence

38- UAGCACCAUUUGAAAUCGGUUA -60

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