| MirGeneDB ID | Lch-Mir-29-P2a |
|---|---|
| Family name | MIR-29 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-29-P1b Lch-Mir-29-P1d Lch-Mir-29-P2b Lch-Mir-29-P2d |
| Orthologues | Agr-Mir-29-P2 Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cmi-Mir-29-P2a-v1 Cte-Mir-29-P2 Dgr-Mir-29-P2 Dma-Mir-29-P2 Dpu-Mir-29-P2 Eba-Mir-29-P2 Esc-Mir-29-P2 Gsp-Mir-29 Hru-Mir-29-P2 Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Loc-Mir-29-P2a Mgi-Mir-29-P2 Mom-Mir-29-P2 Npo-Mir-29-P2 Obi-Mir-29-P2 Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pau-Mir-29-P2 Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rph-Mir-29-P2 Sko-Mir-29-P2 Sme-Mir-29-o2 Spu-Mir-29-P2 War-Mir-29-P2 Xbo-Mir-29-P2 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (LatCha1_add) |
JH127882.1: 625442-625501 [+] Ensembl |
| Seed | AGCACCA |
| Precursor (pre-Mir +30nt flank) |
ACUCCAGUUCCUGUGACCUUUGACAAGAUAACUGAUUUCCUUUGGUGUUCAGAGUCUGCUCUAGUUUCUAGCACCAUUUGAAAUCGGUUGUGUUGAAAGGAUGCAUCAUCUCAGACGAUGGet precursor sequence |
| Structure | 10 20 30 40 50 ACUCCAGUUCCUGUGAC---| GA G CUU C GUCUGC CUUU CAA AUAACUGAUUUC UGGUGUU AGA \ GGAA GUU UGUUGGCUAAAG ACCACGA UCU U GUAGCAGACUCUACUACGUA^ A- G UUU - UUGAUC . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Lch-Mir-29-P2a_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACUGAUUUCCUUUGGUGUUCAGA -23
Get sequence
|
| Mature sequence | Lch-Mir-29-P2a_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- UAGCACCAUUUGAAAUCGGUUG -60
Get sequence
|
