Mir-29-P2h

MirGeneDB ID

Aga-Mir-29-P2h

Family name

MIR-29 (all species)

Species

African malaria mosquito (Anopheles gambiae)

MiRBase ID

aga-mir-998

Paralogues

Aga-Mir-29-P1

Orthologues

Aae-Mir-29-P2h Agr-Mir-29-P2 Asu-Mir-29-P2 Bfl-Mir-29-P2 Bge-Mir-29-P2h Bla-Mir-29-P2 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cte-Mir-29-P2 Dan-Mir-29-P2h Dgr-Mir-29-P2 Dma-Mir-29-P2 Dme-Mir-29-P2h Dmo-Mir-29-P2h Dpu-Mir-29-P2 Dsi-Mir-29-P2h Dya-Mir-29-P2h Eba-Mir-29-P2 Esc-Mir-29-P2 Gpa-Mir-29-P2h Gsp-Mir-29 Hme-Mir-29-P2h Hru-Mir-29-P2 Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Mgi-Mir-29-P2 Mom-Mir-29-P2 Npo-Mir-29-P2 Obi-Mir-29-P2 Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pau-Mir-29-P2 Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rph-Mir-29-P2 Sko-Mir-29-P2 Sme-Mir-29-o2 Spu-Mir-29-P2 Tca-Mir-29-P2h War-Mir-29-P2 Xbo-Mir-29-P2

Node of Origin (locus)

Neoptera

Node of Origin (family)

Bilateria

Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)

NC_064601.1: 12768908-12768978 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2h)

Mir-2-P7 NC_064601.1: 12768536-12768611 [+] Ensembl
Mir-29-P2h NC_064601.1: 12768908-12768978 [+] Ensembl

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

GUGUUUUACGUCAUCAUCAUCGAUACCGGGGCUGAACUCUCGUGGGUCUGCAGUAUUUACAAGCGGCCACAUCGUUCAUGUAGCACCAUGAGAUUCAGCUCCGGUGUUUGGAUGAAAUGCUUUGUUGUAUU

Get precursor sequence

Structure

        10        20          30        40        50        60     
GUGUUUUACGUCAUCAUC   --|              C        GU     GUAUUUACAAGC 
                  AUC  GAUACCGGGGCUGAA UCUCGUGG  CUGCA            G
                  UAG  UUGUGGCCUCGACUU AGAGUACC  GAUGU            G
UUAUGUUGUUUCGUAAAG   GU^              -        AC     ACUUGCUACACC 
 .       120       110       100         90        80        70