MirGeneDB 2.1

MirGeneDB ID

Dmo-Mir-29-P2h

Family name MIR-29 (all species)
Seed AGCACCA
Species Fruit fly (Drosophila mojavensis)
MiRBase ID
Paralogues Dmo-Mir-29-P1  Dmo-Mir-29-P2g 
Orthologues Aae-Mir-29-P2h  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bge-Mir-29-P2h  Bla-Mir-29-P2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cgi-Mir-29-P2  Cin-Mir-29-P2  Csc-Mir-29-P2  Cte-Mir-29-P2  Dan-Mir-29-P2h  Dma-Mir-29-P2h  Dme-Mir-29-P2h  Dpu-Mir-29-P2h  Dsi-Mir-29-P2h  Dya-Mir-29-P2h  Esc-Mir-29-P2  Hme-Mir-29-P2h  Isc-Mir-29-P2  Lgi-Mir-29-P2  Npo-Mir-29-P2  Obi-Mir-29-P2  Ovu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Sko-Mir-29-P2  Spu-Mir-29-P2  Tca-Mir-29-P2h  Xbo-Mir-29-P2 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Bilateria
Genome context
(Dmoj_caf1)
scaffold_6540: 1739281-1739376 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAUGGAUACCAUUAAAAAAUUCAUUUUGGAACUGAAUUCUCGUGGGUCUGCAGUGCACUGUAACCGUUGCAGAGGGCAAUUGUUCAAAUUGAAAUUGAAAUUUUGUAGCACCAUGAGAUUCAGCUCUGGCGUGAGUUUCAAACAUGCAUUCACCAA
Get precursor sequence
Structure
        10          20        30        40        50        60        70        
AAUGGAUACCAUUAAAA--|      U UG  A      U       GU     GUGCACUGUAACCGUUGCAGAGGGC 
                   AAUUCAU U  GA CUGAAU CUCGUGG  CUGCA                         \
                   UUGAGUG G  CU GACUUA GAGUACC  GAUGU                         A
AACCACUUACGUACAAACU^      C GU  C      -       AC     UUUAAAGUUAAAGUUAAACUUGUUA 
    150       140       130       120        110       100        90        80
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Em Fe Ma Ma
Star sequence

Dmo-Mir-29-P2h_5p*

mirBase accessionNone
Sequence
0- ACUGAAUUCUCGUGGGUCUGCA -22
Get sequence
Mature sequence

Dmo-Mir-29-P2h_3p

mirBase accessionNone
Sequence
75- UAGCACCAUGAGAUUCAGCUC -96
Get sequence