MirGeneDB ID | Ebu-Mir-29-P2e |
Family name |
MIR-29 (all species) |
Seed |
AGCACCA |
Species |
Inshore hagfish (Eptatretus burgeri) |
MiRBase ID |
|
Paralogues |
Ebu-Mir-29-P1e
Ebu-Mir-29-P1f
Ebu-Mir-29-P2f
|
Orthologues |
Asu-Mir-29-P2
Bfl-Mir-29-P2
Bla-Mir-29-P2
Cbr-Mir-29-P2
Cel-Mir-29-P2
Cgi-Mir-29-P2
Cin-Mir-29-P2
Csc-Mir-29-P2
Cte-Mir-29-P2
Esc-Mir-29-P2
Isc-Mir-29-P2
Lgi-Mir-29-P2
Npo-Mir-29-P2
Obi-Mir-29-P2
Ovu-Mir-29-P2
Pfl-Mir-29-P2
Pmi-Mir-29-P2
Sko-Mir-29-P2
Spu-Mir-29-P2
Xbo-Mir-29-P2
|
Node of Origin (locus) |
E. burgeri
|
Node of Origin (family) |
Bilateria
|
Genome context (Eburgeri_3) |
FYBX02009700.1: 5993-6052 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUUCCGCUUCUCUAGCCCUCGUCUGAUAUGACUGAUUUCUUUUGGUGUUUAGAGUGUUUUACUCAAUCUAGCACCAUUUGAAAUCAGUUAUGUAGAGAGGGCGUUGCCUUCAAUAGGAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
GUUCCGCUUCUCUAGCC----| G G UUU U GUGUUU
CUC UCU AUAUGACUGAUUUC UGGUGUU AGA \
GAG AGA UGUAUUGACUAAAG ACCACGA UCU U
AAAGGAUAACUUCCGUUGCGG^ - - UUU - AACUCA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Ebu-Mir-29-P2e_5p* |
mirBase accession | None |
Sequence |
0- ACUGAUUUCUUUUGGUGUUUAGA -23
Get sequence
|
Mature sequence |
Ebu-Mir-29-P2e_3p |
mirBase accession | None |
Sequence |
38- UAGCACCAUUUGAAAUCAGUUA -60
Get sequence
|