MirGeneDB 3.0
MirGeneDB ID

Ebu-Mir-29-P2f

Family name MIR-29 (all species)
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-29-P1e  Ebu-Mir-29-P1f  Ebu-Mir-29-P2e 
Orthologues Agr-Mir-29-P2  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dpu-Mir-29-P2  Eba-Mir-29-P2  Esc-Mir-29-P2  Gsp-Mir-29  Hru-Mir-29-P2  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Mgi-Mir-29-P2  Mom-Mir-29-P2  Npo-Mir-29-P2  Obi-Mir-29-P2  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pau-Mir-29-P2  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rph-Mir-29-P2  Sko-Mir-29-P2  Sme-Mir-29-o2  Spu-Mir-29-P2  War-Mir-29-P2  Xbo-Mir-29-P2 
Node of Origin (locus) E. burgeri
Node of Origin (family) Bilateria
Genome context
(Eburgeri_3)		 FYBX02010484.1: 381189-381247 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2f)		 Mir-29-P2f FYBX02010484.1: 381189-381247 [-] UCSC Ensembl
Mir-29-P1f FYBX02010484.1: 381441-381502 [-] UCSC Ensembl
Seed AGCACCA
Precursor
(pre-Mir +30nt flank)		 
UCACAAUUUGAACCAUCCCUUUGUUAGAUGACCGAUUUCUCUUGGUGUUGAGAGUGAAACUUUAGCCUAGCACCAUUUGAAAUCGGUUAUCUUGAGAGGGUGAGUACAACCUCAGACUG
Get precursor sequence
Structure
        10          20        30        40        50         
UCACAAUUUGAACCAUC--|    GUU              UCU        AGAGUGAA 
                   CCUUU   AGAUGACCGAUUUC   UGGUGUUG        \
                   GGGAG   UCUAUUGGCUAAAG   ACCACGAU        A
GUCAGACUCCAACAUGAGU^    AGU              UUU        CCGAUUUC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Ebu-Mir-29-P2f_5p*
mirBase accessionNone
Sequence 
0- ACCGAUUUCUCUUGGUGUUGAG -22
Get sequence
Mature sequence

Ebu-Mir-29-P2f_3p
mirBase accessionNone
Sequence 
37- UAGCACCAUUUGAAAUCGGUUA -59
Get sequence