| MirGeneDB ID | Bpl-Mir-29-o3 |
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| Family name |
MIR-29 (all species) |
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| Species |
Monogonont Rotifer 1 (Brachionus plicatilis) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Gsp-Mir-29
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| Node of Origin (locus) |
B. plicatilis
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| Node of Origin (family) |
Bilateria
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Genome context
(Bpl_ASM1027981) |
QEOQ01000316.1: 109373-109456 [-]
Ensembl
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| Seed |
AGCACCA |
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Precursor
(pre-Mir +30nt flank) |
UAAAACCUACUAACCAUAUUUACGAGAUUAGCUGAUAUACAUGGUGUAUUGUUAGUAUUGAAAAACUUGUUGCCAAAGUUAAAUCUUCUUACAAGCACCAGGUAAUAUCAGCUGACUCUAGUAAAUUGCUUGCCUCCUAACAAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60 70
UAAAACCUACUAACCAU- G - -| A A UAGUAUUGAAAAACUUGU
AUUUAC AGA UUAGCUGAUA UAC UGGUGU UUGU U
UAAAUG UCU AGUCGACUAU AUG ACCACG AACA G
CAACAAUCCUCCGUUCGU A C A^ G - UUCUUCUAAAUUGAAACC
140 130 120 110 100 90 80 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | The 3' end of the 3p arm may be monoadenylated. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Bpl-Mir-29-o3_5p* |
| mirBase accession | None |
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| Sequence |
0- GCUGAUAUACAUGGUGUAUUGU -22
Get sequence
|
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| Mature sequence |
Bpl-Mir-29-o3_3p |
| mirBase accession | None |
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| Sequence |
62- AAGCACCAGGUAAUAUCAGCUG -84
Get sequence
|
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