MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-29-P2d

Family name MIR-29 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-29-P1b-v1  Loc-Mir-29-P1d  Loc-Mir-29-P2a  Loc-Mir-29-P2b  Loc-Mir-29-P2d-v1 
Orthologues Aca-Mir-29-P2d  Agr-Mir-29-P2  Ami-Mir-29-P2d  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2d7  Bta-Mir-29-P2d8  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2d7  Cfa-Mir-29-P2d8  Cja-Mir-29-P2d  Cli-Mir-29-P2d  Cmi-Mir-29-P2d  Cpi-Mir-29-P2d  Cpo-Mir-29-P2d  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dno-Mir-29-P2d  Dpu-Mir-29-P2  Dre-Mir-29-P2d2  Eba-Mir-29-P2  Eca-Mir-29-P2d7  Eca-Mir-29-P2d8  Esc-Mir-29-P2  Ete-Mir-29-P2d  Gga-Mir-29-P2d  Gja-Mir-29-P2d  Gmo-Mir-29-P2d1  Gmo-Mir-29-P2d2  Gsp-Mir-29  Hru-Mir-29-P2  Hsa-Mir-29-P2d  Laf-Mir-29-P2d  Lch-Mir-29-P2d  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Mal-Mir-29-P2d1  Mal-Mir-29-P2d2  Mdo-Mir-29-P2d  Mgi-Mir-29-P2  Mml-Mir-29-P2d  Mmr-Mir-29-P2d  Mmu-Mir-29-P2d  Mom-Mir-29-P2  Mun-Mir-29-P2d  Neu-Mir-29-P2d  Npo-Mir-29-P2  Oan-Mir-29-P2d  Obi-Mir-29-P2  Ocu-Mir-29-P2d  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pab-Mir-29-P2d  Pau-Mir-29-P2  Pbv-Mir-29-P2d  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rno-Mir-29-P2d5  Rno-Mir-29-P2d6  Rph-Mir-29-P2  Sha-Mir-29-P2d  Sko-Mir-29-P2  Sme-Mir-29-o2  Spt-Mir-29-P2d  Spu-Mir-29-P2  Sto-Mir-29-P2d  Tgu-Mir-29-P2d  Tni-Mir-29-P2d1  Tni-Mir-29-P2d2  War-Mir-29-P2  Xbo-Mir-29-P2  Xla-Mir-29-P2d3  Xla-Mir-29-P2d4  Xtr-Mir-29-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)		 LG3: 30969986-30970043 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2d-v2)		 Mir-29-P1d LG3: 30969161-30969226 [+] Ensembl
Mir-29-P2d-v1 LG3: 30969985-30970044 [+] Ensembl
Mir-29-P2d-v2 LG3: 30969986-30970043 [+] Ensembl
Variant

Loc-Mir-29-P2d-v2
Seed UAGCACC
Precursor
(pre-Mir +30nt flank)		 
CUUCUCCCUGAGGCCUCUUACCAAGGCUGACCGAUUUCUUUUGGUGUUCAGAGUCAUCUUCAGUUUCUAGCACCAUUUGAAAUCGGUUACAAUGUAGGAGGAAGAUCAGCUGAACACU
Get precursor sequence
Structure
        10        20          30        40        50         
CUUCUCCCUGAGGCCUCUUA  AAGGC--|          UUU       C    UCAUC 
                    CC       UGACCGAUUUC   UGGUGUU AGAG     \
                    GG       AUUGGCUAAAG   ACCACGA UCUU     U
UCACAAGUCGACUAGAAGGA  AUGUAAC^          UUU       -    UGACU 
      110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-29-P2d-v2_5p*
mirBase accessionNone
Sequence 
0- CCGAUUUCUUUUGGUGUUCAGAG -23
Get sequence
Mature sequence

Loc-Mir-29-P2d-v2_3p
mirBase accessionNone
Sequence 
36- CUAGCACCAUUUGAAAUCGGUU -58
Get sequence
Variant

Loc-Mir-29-P2d-v1
Seed AGCACCA
Precursor
(pre-Mir +30nt flank)		 
CCUUCUCCCUGAGGCCUCUUACCAAGGCUGACCGAUUUCUUUUGGUGUUCAGAGUCAUCUUCAGUUUCUAGCACCAUUUGAAAUCGGUUACAAUGUAGGAGGAAGAUCAGCUGAACACUU
Get precursor sequence
Structure
        10            20        30        40        50          
CCUUCUCCCUGAGGCCU----|    CAAGGC           UUU       C   GUCAUC 
                     CUUAC      UGACCGAUUUC   UGGUGUU AGA      \
                     GGAUG      AUUGGCUAAAG   ACCACGA UCU      U
UUCACAAGUCGACUAGAAGGA^    UAAC--           UUU       -   UUGACU 
.       110       100          90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-29-P2d-v1_5p*
mirBase accessionNone
Sequence 
0- ACCGAUUUCUUUUGGUGUUCAGA -23
Get sequence
Mature sequence

Loc-Mir-29-P2d-v1_3p
mirBase accessionNone
Sequence 
38- UAGCACCAUUUGAAAUCGGUUA -60
Get sequence