Mir-29-P1b1-v2

MirGeneDB ID

Mal-Mir-29-P1b1

Family name

Species

MiRBase ID

Paralogues

Mal-Mir-29-P1b1-v1 Mal-Mir-29-P1b2-v1 Mal-Mir-29-P1d1 Mal-Mir-29-P1d2-v1 Mal-Mir-29-P2b1-v1 Mal-Mir-29-P2d1 Mal-Mir-29-P2d2

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1b-v1 Aga-Mir-29-P1 Agr-Mir-29-P1 Ami-Mir-29-P1b-v1 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Bta-Mir-29-P1b-v1 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1b-v1 Cin-Mir-29-o1 Cja-Mir-29-P1b-v1 Cli-Mir-29-P1b-v1 Cmi-Mir-29-P1b Cpi-Mir-29-P1b-v1 Cpo-Mir-29-P1b-v1 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1b-v1 Dpu-Mir-29-P1 Dre-Mir-29-P1b1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Eca-Mir-29-P1b-v1 Esc-Mir-29-P1 Ete-Mir-29-P1b-v1 Gga-Mir-29-P1b-v1 Gja-Mir-29-P1b-v1 Gmo-Mir-29-P1b1 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Hsa-Mir-29-P1b-v1 Isc-Mir-29-P1 Laf-Mir-29-P1b-v1 Lch-Mir-29-P1b Lhy-Mir-29-P1 Llo-Mir-29-P1 Loc-Mir-29-P1b-v1 Mdo-Mir-29-P1b-v1 Mgi-Mir-29-P1 Mml-Mir-29-P1b-v1 Mmr-Mir-29-P1b-v1 Mmu-Mir-29-P1b-v1 Mom-Mir-29-P1 Mun-Mir-29-P1b Neu-Mir-29-P1b-v1 Npo-Mir-29-P1 Oan-Mir-29-P1b-v1 Obi-Mir-29-P1 Ocu-Mir-29-P1b-v1 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pab-Mir-29-P1b-v1 Pau-Mir-29-P1 Pbv-Mir-29-P1b-v1 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rno-Mir-29-P1b-v1 Rph-Mir-29-P1 Sha-Mir-29-P1b-v1 Sko-Mir-29-P1 Snu-Mir-29-P1 Spt-Mir-29-P1b Spu-Mir-29-P1 Sto-Mir-29-P1b Tca-Mir-29-P1 Tgu-Mir-29-P1b-v1 Tni-Mir-29-P1b1 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1 Xtr-Mir-29-P1b-v1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884739.1: 6343654-6343716 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P1b1-v2)

Mir-29-P2b1-v1 KV884739.1: 6343485-6343545 [-] UCSC Ensembl
Mir-29-P2b1-v2 KV884739.1: 6343485-6343545 [-] UCSC Ensembl
Mir-29-P1b1-v1 KV884739.1: 6343654-6343716 [-] UCSC Ensembl
Mir-29-P1b1-v2 KV884739.1: 6343654-6343716 [-] UCSC Ensembl

Variant

Mal-Mir-29-P1b1-v2

Seed

UAGCACC

Precursor
(pre-Mir +30nt flank)

GCCUGACACCAAAACAUCUUCCCCAAGAAGCUGGUUUCACGUGGUGGUUUAGAUGUGUGUUCCUGUUGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGGGAGAGGAGGACAGCUCCAGCAGUG

Get precursor sequence

Structure

        10           20         30        40        50        60 
GCCUGACACCAAAACAUC---           -|         C      GU     UGUGUGU 
                     UUCCCCAAGAA GCUGGUUUCA GUGGUG  UUAGA       \
                     GAGGGGUUCUU UGACUAAAGU UACCAC  GAUCU       U
GUGACGACCUCGACAGGAGGA           G^         U      --     GUUGUCC 
 120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Fe	Fe	In	Ma	Ma

Star sequence

Mal-Mir-29-P1b1-v2_5p*

mirBase accession

None

Sequence

0- CUGGUUUCACGUGGUGGUUUAGA -23

Get sequence

Mature sequence

Mal-Mir-29-P1b1-v2_3p

mirBase accession

None

Sequence

39- CUAGCACCAUUUGAAAUCAGUGUU -63

Get sequence

Variant

Mal-Mir-29-P1b1-v1

Seed

AGCACCA

Precursor
(pre-Mir +30nt flank)

GCCUGACACCAAAACAUCUUCCCCAAGAAGCUGGUUUCACGUGGUGGUUUAGAUGUGUGUUCCUGUUGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGGGAGAGGAGGACAGCUCCAGCAGUG

Get precursor sequence

Structure

        10           20         30        40        50        60 
GCCUGACACCAAAACAUC---           -|         C      GU     UGUGUGU 
                     UUCCCCAAGAA GCUGGUUUCA GUGGUG  UUAGA       \
                     GAGGGGUUCUU UGACUAAAGU UACCAC  GAUCU       U
GUGACGACCUCGACAGGAGGA           G^         U      --     GUUGUCC 
 120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Fe	Fe	In	Ma	Ma

Star sequence

Mal-Mir-29-P1b1-v1_5p*

mirBase accession

None

Sequence

0- CUGGUUUCACGUGGUGGUUUAGA -23

Get sequence

Mature sequence

Mal-Mir-29-P1b1-v1_3p

mirBase accession

None

Sequence

40- UAGCACCAUUUGAAAUCAGUGUU -63

Get sequence