Mir-29-P1b-v2

MirGeneDB ID

Hsa-Mir-29-P1b-v2

Family name

MIR-29 (all species)

Seed

UAGCACC

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-29b-1

Paralogues

Hsa-Mir-29-P1b-v1 Hsa-Mir-29-P1d-v1 Hsa-Mir-29-P1d-v2 Hsa-Mir-29-P2b Hsa-Mir-29-P2d

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1b-v1 Aca-Mir-29-P1b-v2 Ami-Mir-29-P1b-v1 Ami-Mir-29-P1b-v2 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Bta-Mir-29-P1b-v1 Bta-Mir-29-P1b-v2 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1b-v1 Cfa-Mir-29-P1b-v2 Cgi-Mir-29-P1 Cli-Mir-29-P1b-v1 Cli-Mir-29-P1b-v2 Cmi-Mir-29-P1b Cpi-Mir-29-P1b-v1 Cpi-Mir-29-P1b-v2 Cpo-Mir-29-P1b-v1 Cpo-Mir-29-P1b-v2 Cte-Mir-29-P1 Dan-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1b-v1 Dno-Mir-29-P1b-v2 Dre-Mir-29-P1b1 Dsi-Mir-29-P1 Dya-Mir-29-P1 Esc-Mir-29-P1 Ete-Mir-29-P1b-v1 Ete-Mir-29-P1b-v2 Gga-Mir-29-P1b-v1 Gga-Mir-29-P1b-v2 Gja-Mir-29-P1b-v1 Gja-Mir-29-P1b-v2 Gmo-Mir-29-P1b1 Gmo-Mir-29-P1b2 Hme-Mir-29-P1 Lch-Mir-29-P1b Loc-Mir-29-P1b-v1 Loc-Mir-29-P1b-v2 Mal-Mir-29-P1b1-v1 Mal-Mir-29-P1b1-v2 Mal-Mir-29-P1b2-v1 Mal-Mir-29-P1b2-v2 Mdo-Mir-29-P1b-v1 Mdo-Mir-29-P1b-v2 Mml-Mir-29-P1b-v1 Mml-Mir-29-P1b-v2 Mmu-Mir-29-P1b-v1 Mmu-Mir-29-P1b-v2 Mun-Mir-29-P1b Npo-Mir-29-P1 Oan-Mir-29-P1b-v1 Oan-Mir-29-P1b-v2 Obi-Mir-29-P1 Ocu-Mir-29-P1b-v1 Ocu-Mir-29-P1b-v2 Ovu-Mir-29-P1 Pbv-Mir-29-P1b-v1 Pbv-Mir-29-P1b-v2 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Rno-Mir-29-P1b-v1 Rno-Mir-29-P1b-v2 Sha-Mir-29-P1b-v1 Sha-Mir-29-P1b-v2 Sko-Mir-29-P1 Spt-Mir-29-P1b Spu-Mir-29-P1 Sto-Mir-29-P1b Tca-Mir-29-P1 Tgu-Mir-29-P1b-v1 Tgu-Mir-29-P1b-v2 Tni-Mir-29-P1b1 Tni-Mir-29-P1b2 Xbo-Mir-29-P1 Xla-Mir-29-P1b3 Xla-Mir-29-P1b4 Xtr-Mir-29-P1b-v1 Xtr-Mir-29-P1b-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(hg38)

chr7: 130877468-130877529 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P1b-v2)

Mir-29-P2b chr7: 130876748-130876807 [-] UCSC Ensembl
Mir-29-P1b-v1 chr7: 130877467-130877530 [-] UCSC Ensembl
Mir-29-P1b-v2 chr7: 130877468-130877529 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAAAAUAGAUCAUAAAGCUUCUUCAGGAAGCUGGUUUCAUAUGGUGGUUUAGAUUUAAAUAGUGAUUGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGGGGAGACCAGCUGCGCUGCACUAC

Get precursor sequence

Structure

        10          20         30        40        50        60 
AAAAAUAGAUCAUAAAG--            -|         U      GU      UUAAAU 
                   CUUCUUCAGGAA GCUGGUUUCA AUGGUG  UUAGAU      \
                   GAGGGGGUUCUU UGACUAAAGU UACCAC  GAUCUG      A
CAUCACGUCGCGUCGACCA            G^         U      --      UUAGUG 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Star sequence

Hsa-Mir-29-P1b-v2_5p*

mirBase accession

MIMAT0004514

Sequence

0- CUGGUUUCAUAUGGUGGUUUAGAU -24

Get sequence

Proposed targets

microrna.org: MIMAT0004514
TargetScanVert: hsa-miR-29b-1-5p
TargetMiner: hsa-miR-29b-1-5p
miRDB: MIMAT0004514

Mature sequence

Hsa-Mir-29-P1b-v2_3p

mirBase accession

MIMAT0000100

Sequence

39- CUAGCACCAUUUGAAAUCAGUGU -62

Get sequence

Proposed targets

microrna.org: MIMAT0000100
TargetScanVert: hsa-miR-29b-3p
TargetMiner: hsa-miR-29b-3p
miRDB: MIMAT0000100