MirGeneDB 3.0
MirGeneDB ID

Dma-Mir-9-P9

Family name MIR-9 (all species)
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues Dma-Mir-9-P10 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P9  Dgr-Mir-9  Dlo-Mir-9-P9  Dme-Mir-9-P9  Dmo-Mir-9-P9  Dpu-Mir-9-P9  Dsi-Mir-9-P9  Dya-Mir-9-P9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hme-Mir-9-P9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  Tca-Mir-9-P9a  Tca-Mir-9-P9b-v1  Tca-Mir-9-P9c-v1  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Bilateria
Genome context
(DMA_ASM399081)		 NC_046175.1: 6286883-6286941 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P9)		 Mir-965 NC_046175.1: 6247768-6247831 [-] Ensembl
Mir-36 NC_046175.1: 6285796-6285856 [-] Ensembl
Mir-279-P1d NC_046175.1: 6285937-6286000 [-] Ensembl
Mir-12608 NC_046175.1: 6286446-6286507 [-] Ensembl
Mir-29-P2 NC_046175.1: 6286592-6286666 [-] Ensembl
Mir-2-P5 NC_046175.1: 6286723-6286816 [-] Ensembl
Mir-9-P9 NC_046175.1: 6286883-6286941 [-] Ensembl
Mir-279-P1c NC_046175.1: 6287015-6287090 [-] Ensembl
Seed CUUUGGU
Precursor
(pre-Mir +30nt flank)		 
AACCAUAUGUUUUAUUCAUAUUUGCUUGUUUCUUUGGUGGUCUAGCUGUAUGAGGUUUUUAAGUUCAUAAAGCUAGAUCAGCAAGGCAACAAGUGAAGUUGUUUUCAACUACACUUUUA
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Structure
        10        20          30        40        50         
AACCAUAUGUUUUAUUCAUA--| UG      U     G          G     GGUUU 
                      UU  CUUGUU CUUUG UGGUCUAGCU UAUGA     \
                      AA  GAACAA GGAAC ACUAGAUCGA AUACU     U
AUUUUCACAUCAACUUUUGUUG^ GU      C     G          A     UGAAU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Mature sequence

Dma-Mir-9-P9_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUGGUCUAGCUGUAUGA -23
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Star sequence

Dma-Mir-9-P9_3p*
mirBase accessionNone
Sequence 
36- AUAAAGCUAGAUCAGCAAGGCAA -59
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