MirGeneDB 2.1

MirGeneDB ID

Dme-Mir-9-P9

Family name MIR-9 (all species)
Seed UAAAGCU
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-4
Paralogues Dme-Mir-9-P10  Dme-Mir-9-P11  Dme-Mir-9-P12-v1  Dme-Mir-9-P12-v2  Dme-Mir-9-P13 
Orthologues Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P9  Dmo-Mir-9-P9  Dsi-Mir-9-P9  Dya-Mir-9-P9  Esc-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Npo-Mir-9  Obi-Mir-9  Ovu-Mir-9  Pmi-Mir-9  Spu-Mir-9  Tca-Mir-9-o9-v1  Tca-Mir-9-o9-v2  Xbo-Mir-9 
Node of Origin (locus) Drosophila
Node of Origin (family) Bilateria
Genome context
(Drosophila_melanogaster_BDGP6)
2R: 19661300-19661356 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P9)
Mir-4983 2R: 19637431-19637502 [+] UCSC Ensembl
Mir-2-P6c 2R: 19660722-19660787 [-] UCSC Ensembl
Mir-2-P6b 2R: 19660874-19660935 [-] UCSC Ensembl
Mir-2-P6a 2R: 19661012-19661074 [-] UCSC Ensembl
Mir-2-P5 2R: 19661162-19661222 [-] UCSC Ensembl
Mir-9-P9 2R: 19661300-19661356 [-] UCSC Ensembl
Mir-279-P2 2R: 19661435-19661509 [-] UCSC Ensembl
Mir-3-P1 2R: 19661600-19661656 [-] UCSC Ensembl
Mir-3-P2 2R: 19661710-19661768 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAUAUUAUGGAGCGGUUGCAAUUAGUUUCUUUGGUCGUCCAGCCUUAGGUGAUUUUUCCGGUCAUAAAGCUAGACAACCAUUGAAGUUCGUUGUGGCAUUAGCAGCACCACGAGU
Get precursor sequence
Structure
        10          20        30        40        50         
AAAAUAUUAUGGAGCGG--|UG    U GU   UU    C   C   CUUAG    UUUU 
                   U  CAAU A  UUC  UGGU GUC AGC     GUGA    \
                   G  GUUG U  AAG  ACCA CAG UCG     UACU    U
UGAGCACCACGACGAUUAC^GU    C UG   UU    A   A   AAA--    GGCC 
     110       100        90        80        70          60
Deep sequencing
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CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo He L3 Fe Fe La Wh
Star sequence

Dme-Mir-9-P9_5p*

mirBase accessionMIMAT0020785
Sequence
0- CUUUGGUCGUCCAGCCUUAGGUGA -24
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Mature sequence

Dme-Mir-9-P9_3p

mirBase accessionMIMAT0000109
Sequence
35- AUAAAGCUAGACAACCAUUGAA -57
Get sequence
Proposed targets microrna.org: MIMAT0000109
TargetScanFly: dme-miR-4