Mir-9-P9

MirGeneDB ID

Dya-Mir-9-P9

Family name

MIR-9 (all species)

Seed

UAAAGCU

Species

Fruit fly (Drosophila yakuba)

MiRBase ID

dya-mir-4

Paralogues

Dya-Mir-9-P10 Dya-Mir-9-P11 Dya-Mir-9-P12-v1 Dya-Mir-9-P12-v2 Dya-Mir-9-P13

Orthologues

Bfl-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Dan-Mir-9-P9 Dme-Mir-9-P9 Dmo-Mir-9-P9 Dsi-Mir-9-P9 Esc-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Npo-Mir-9 Obi-Mir-9 Ovu-Mir-9 Pmi-Mir-9 Spu-Mir-9 Tca-Mir-9-o9-v1 Tca-Mir-9-o9-v2 Xbo-Mir-9

Node of Origin (locus)

Drosophila

Node of Origin (family)

Bilateria

Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)

2R: 13623927-13623983 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-9-P9)

Mir-3-P2 2R: 13623513-13623571 [+] UCSC Ensembl
Mir-3-P1 2R: 13623628-13623684 [+] UCSC Ensembl
Mir-279-P2 2R: 13623775-13623848 [+] UCSC Ensembl
Mir-9-P9 2R: 13623927-13623983 [+] UCSC Ensembl
Mir-2-P5 2R: 13624064-13624124 [+] UCSC Ensembl
Mir-2-P6a 2R: 13624211-13624273 [+] UCSC Ensembl
Mir-2-P6b 2R: 13624349-13624410 [+] UCSC Ensembl
Mir-2-P6c 2R: 13624497-13624562 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUCAGAUACUGGGGCAGUUGCAAUUAGUUUCUUUGGUCGUCCAGCCUUAGGUGACUUUUCUGAUCAUAAAGCUAGACAACCAUUGAAGUUCGUUGUGGCAUUAGCAGCACCAUUACG

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Structure

        10          20        30        40        50         
AUCAGAUACUGGGGCAG--|UG    U GU   UU    C   C   CUUAG    CUUU 
                   U  CAAU A  UUC  UGGU GUC AGC     GUGA    \
                   G  GUUG U  AAG  ACCA CAG UCG     UACU    U
GCAUUACCACGACGAUUAC^GU    C UG   UU    A   A   AAA--    AGUC 
     110       100        90        80        70          60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

He	Wh

Star sequence

Dya-Mir-9-P9_5p*

mirBase accession

None

Sequence

0- CUUUGGUCGUCCAGCCUUAGGUGA -24

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Mature sequence

Dya-Mir-9-P9_3p

mirBase accession

MIMAT0009058

Sequence

35- AUAAAGCUAGACAACCAUUGAA -57

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