Mir-2-P6c

MirGeneDB ID

Dya-Mir-2-P6c

Family name

MIR-2 (all species)

Species

Fruit fly (Drosophila yakuba)

MiRBase ID

dya-mir-6-3

Paralogues

Dya-Mir-2-P1-v1 Dya-Mir-2-P2a Dya-Mir-2-P2b1 Dya-Mir-2-P2b2 Dya-Mir-2-P3a Dya-Mir-2-P3b Dya-Mir-2-P4a-v1 Dya-Mir-2-P4b-v1 Dya-Mir-2-P5 Dya-Mir-2-P6a Dya-Mir-2-P6b Dya-Mir-2-P7 Dya-Mir-2-P8 Dya-Mir-2-P9-v1

Orthologues

Asu-Mir-2-o6 Dan-Mir-2-P6c Dme-Mir-2-P6c Dmo-Mir-2-P6c Dsi-Mir-2-P6c Gpa-Mir-2-P6 Gsp-Mir-2 Ple-Mir-2

Node of Origin (locus)

Drosophila

Node of Origin (family)

Protostomia

Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)

2R: 13624497-13624562 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P6c)

Mir-3-P1 2R: 13623513-13623571 [+] UCSC Ensembl
Mir-3-P2 2R: 13623628-13623684 [+] UCSC Ensembl
Mir-279-P1 2R: 13623775-13623848 [+] UCSC Ensembl
Mir-9-P9 2R: 13623927-13623983 [+] UCSC Ensembl
Mir-2-P5 2R: 13624064-13624124 [+] UCSC Ensembl
Mir-2-P6a 2R: 13624211-13624273 [+] UCSC Ensembl
Mir-2-P6b 2R: 13624349-13624410 [+] UCSC Ensembl
Mir-2-P6c 2R: 13624497-13624562 [+] UCSC Ensembl

Seed

AUCACAG

Precursor
(pre-Mir +30nt flank)

AGUGCGAAAAUUGAAAAUUGUUCAAAAAGAAGGGAACGGUUGCUGAUGAUGUAGUUCGAAACUCUCUCAAUUUAUAUCACAGUGGCUGUUCUUUUUUAUUUGGCAAUCGAUCUACAUUCAGUGGUG

Get precursor sequence

Structure

        10           20        30        40        50        60   
AGUGCGAAAAUUGAAAA---|   U    A             UG   A       GUUCGAAAC 
                    UUGU CAAA AGAAGGGAACGGU  CUG UGAUGUA         \
                    AACG GUUU UUUUUUCUUGUCG  GAC ACUAUAU         U
GUGGUGACUUACAUCUAGCU^   -    A             GU   -       UUAACUCUC 
    120       110        100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

He	Wh

Star sequence

Dya-Mir-2-P6c_5p*

mirBase accession

None

Sequence

0- AGGGAACGGUUGCUGAUGAUGUA -23

Get sequence

Mature sequence

Dya-Mir-2-P6c_3p

mirBase accession

MIMAT0009078

Sequence

44- UAUCACAGUGGCUGUUCUUUUU -66

Get sequence