Mir-2-P6c

MirGeneDB ID

Dan-Mir-2-P6c

Family name

MIR-2 (all species)

Species

Fruit fly (Drosophila ananassae)

MiRBase ID

dan-mir-6-3

Paralogues

Dan-Mir-2-P1-v1 Dan-Mir-2-P2a Dan-Mir-2-P2b1 Dan-Mir-2-P2b2 Dan-Mir-2-P3a-v1 Dan-Mir-2-P3b Dan-Mir-2-P4a-v1 Dan-Mir-2-P4b-v1 Dan-Mir-2-P5 Dan-Mir-2-P6a Dan-Mir-2-P6b Dan-Mir-2-P7 Dan-Mir-2-P8 Dan-Mir-2-P9

Orthologues

Asu-Mir-2-o6 Dme-Mir-2-P6c Dmo-Mir-2-P6c Dsi-Mir-2-P6c Dya-Mir-2-P6c Gpa-Mir-2-P6 Gsp-Mir-2 Ple-Mir-2

Node of Origin (locus)

Drosophila

Node of Origin (family)

Protostomia

Genome context
(Dana_caf1)

scaffold_13266: 9732130-9732191 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P6c)

Mir-3-P1 scaffold_13266: 9731119-9731176 [+] Ensembl
Mir-3-P2 scaffold_13266: 9731233-9731293 [+] Ensembl
Mir-279-P1 scaffold_13266: 9731371-9731449 [+] Ensembl
Mir-9-P9 scaffold_13266: 9731536-9731592 [+] Ensembl
Mir-2-P5 scaffold_13266: 9731684-9731747 [+] Ensembl
Mir-2-P6a scaffold_13266: 9731826-9731883 [+] Ensembl
Mir-2-P6b scaffold_13266: 9731970-9732041 [+] Ensembl
Mir-2-P6c scaffold_13266: 9732130-9732191 [+] Ensembl

Seed

AUCACAG

Precursor
(pre-Mir +30nt flank)

UGGACAGAAAUUGAAAAUUGUUCAAAAAGAAGGGAACGGUCGCUGCUGAUGUAGUUAUUCGCAUCAUUUAUAUCACAGUGGCUGUUCUUUUUUGUUUGCCAAUCGAUCUACGUUCCUGCGAA

Get precursor sequence

Structure

        10           20        30        40        50        60 
UGGACAGAAAUUGAAAA---|  UU    A                  C       GUUAUUC 
                    UUG  CAAA AGAAGGGAACGGUCGCUG UGAUGUA       \
                    AAC  GUUU UUUUUUCUUGUCGGUGAC ACUAUAU       G
AAGCGUCCUUGCAUCUAGCU^  C-    G                  -       UUACUAC 
120       110       100         90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe

Star sequence

Dan-Mir-2-P6c_5p*

mirBase accession

None

Sequence

0- AGGGAACGGUCGCUGCUGAUGUA -23

Get sequence

Mature sequence

Dan-Mir-2-P6c_3p

mirBase accession

MIMAT0008462

Sequence

40- UAUCACAGUGGCUGUUCUUUUU -62

Get sequence