MirGeneDB 2.1
MirGeneDB ID

Asu-Mir-2-o6

Family name MIR-2 (all species)
Seed ACGGCAA
Species Large roundworm (Ascaris suum)
MiRBase ID
Paralogues Asu-Mir-2-o7a  Asu-Mir-2-o7b  Asu-Mir-2-o8  Asu-Mir-2-o9  Asu-Mir-2-o10  Asu-Mir-2-o11a  Asu-Mir-2-o11b  Asu-Mir-2-o11c  Asu-Mir-2-o11d  Asu-Mir-2-P11 
Orthologues Dan-Mir-2-P6a  Dan-Mir-2-P6b  Dan-Mir-2-P6c  Dme-Mir-2-P6a  Dme-Mir-2-P6b  Dme-Mir-2-P6c  Dmo-Mir-2-P6a  Dmo-Mir-2-P6b  Dmo-Mir-2-P6c  Dsi-Mir-2-P6a  Dsi-Mir-2-P6b  Dsi-Mir-2-P6c  Dya-Mir-2-P6a  Dya-Mir-2-P6b  Dya-Mir-2-P6c 
Node of Origin (locus) A. suum
Node of Origin (family) Protostomia
Genome context
(ASU_PRJNA80881_plustraces)		 Scaffold800: 124302-124361 [+]
Clustered miRNAs
(< 50kb from Mir-2-o6)		 Mir-5350-P6 Scaffold800: 97547-97610 [-]
Mir-279-o26 Scaffold800: 97897-97956 [-]
Mir-2-o10 Scaffold800: 98049-98111 [-]
Mir-36-o28 Scaffold800: 98613-98672 [-]
Precursor
(pre-Mir +30nt flank)
UUCGUUGCCGAGAUGAGCUCCGUAUCCGACAACGGCAAAGACUGUUGAUAUGCUAAUGUUAGGAUCAUAUCACAGUAUUUUUGCUGUUCUUGGCUUCAGAGUAUCAUUUGUUGCCUUCAG
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Structure
        10          20        30        40          50         
UUCGUUGCCGAGAUGAG--   CGUAU    C          --|    U      CUAAUG 
                   CUC     CCGA AACGGCAAAG  ACUGU GAUAUG      \
                   GAG     GGUU UUGUCGUUUU  UGACA CUAUAC      U
GACUUCCGUUGUUUACUAU   ACUUC    C          UA^    -      UAGGAU 
.       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
0h 11 12 24 46 64 6d 7d 8d 96 Em La Ov Se Sp Te Zy
Mature sequence

Asu-Mir-2-o6_5p
mirBase accessionNone
Sequence 
0- AACGGCAAAGACUGUUGAUAUG -22
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Co-mature sequence

Asu-Mir-2-o6_3p
mirBase accessionNone
Sequence 
37- UAUCACAGUAUUUUUGCUGUUCU -60
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