MirGeneDB 2.1
MirGeneDB ID

Asu-Mir-2-o9

Family name MIR-2 (all species)
Seed AUCACAG
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-43d
Paralogues Asu-Mir-2-o6  Asu-Mir-2-o7a  Asu-Mir-2-o7b  Asu-Mir-2-o8  Asu-Mir-2-o10  Asu-Mir-2-o11a  Asu-Mir-2-o11b  Asu-Mir-2-o11c  Asu-Mir-2-o11d  Asu-Mir-2-P11 
Orthologues Dan-Mir-2-P9  Dme-Mir-2-P9-v1  Dme-Mir-2-P9-v2  Dmo-Mir-2-P9  Dsi-Mir-2-P9-v1  Dsi-Mir-2-P9-v2  Dya-Mir-2-P9-v1  Dya-Mir-2-P9-v2 
Node of Origin (locus) A. suum
Node of Origin (family) Protostomia
Genome context
(ASU_PRJNA80881_plustraces)		 Scaffold187: 163929-163989 [-]
Clustered miRNAs
(< 50kb from Mir-2-o9)		 Mir-2-o9 Scaffold187: 163929-163989 [-]
Mir-279-o27 Scaffold187: 164312-164371 [-]
Precursor
(pre-Mir +30nt flank)
GAGGUAAACCUAGGCAGCUUUAGUGGCAGUAACCCGAUGUGGCUGCGAUACUGUUUGCACAUGGCCGAGUAUCACAGUCUUAUCCGGUCACCGCCUCUUCGGCUCUCCUACUCACAUUCCC
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Structure
        10          20        30        40        50          
GAGGUAAACCUAGGCAG--| UU  U   A  A   C    U     C      GUUUGCA 
                   CU  AG GGC GU ACC GAUG GGCUG GAUACU       \
                   GG  UC CCG CA UGG CUAU CUGAC CUAUGA       C
CCCUUACACUCAUCCUCUC^ CU  U   C  C   C    U     A      GCCGGUA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
0h 11 12 24 46 64 6d 7d 8d 96 Em La Ov Se Sp Te Zy
Star sequence

Asu-Mir-2-o9_5p*
mirBase accessionMIMAT0021433
Sequence 
0- AACCCGAUGUGGCUGCGAUACU -22
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Mature sequence

Asu-Mir-2-o9_3p
mirBase accessionMIMAT0021434
Sequence 
39- UAUCACAGUCUUAUCCGGUCAC -61
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