Mir-2-P2b2

MirGeneDB ID

Dya-Mir-2-P2b2

Family name

MIR-2 (all species)

Species

Fruit fly (Drosophila yakuba)

MiRBase ID

dya-mir-13b-2

Paralogues

Dya-Mir-2-P1-v1 Dya-Mir-2-P2a Dya-Mir-2-P2b1 Dya-Mir-2-P3a Dya-Mir-2-P3b Dya-Mir-2-P4a-v1 Dya-Mir-2-P4b-v1 Dya-Mir-2-P5 Dya-Mir-2-P6a Dya-Mir-2-P6b Dya-Mir-2-P6c Dya-Mir-2-P7 Dya-Mir-2-P8 Dya-Mir-2-P9-v1

Orthologues

Aae-Mir-2-P2b Aga-Mir-2-P2b Bge-Mir-2-P2b Dan-Mir-2-P2b2 Dlo-Mir-2-P2b Dma-Mir-2-o2 Dma-Mir-2-P2 Dme-Mir-2-P2b2 Dmo-Mir-2-P2b2 Dpu-Mir-2-o2 Dpu-Mir-2-P2 Dsi-Mir-2-P2b2 Gpa-Mir-2-P2b Gsp-Mir-2 Hme-Mir-2-P2b Ple-Mir-2 Tca-Mir-2-P2b

Node of Origin (locus)

Drosophila

Node of Origin (family)

Protostomia

Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)

X: 12330569-12330629 [-] UCSC Ensembl

Seed

AUCACAG

Precursor
(pre-Mir +30nt flank)

ACUCGUCGCUUACCCCUGCUGUCUAGUAACGCGUCAAAAUGACUGUGAGCUAUGUGGAUUUGACUUCAUAUCACAGCCAUUUUGACGAGUUUGCUGGCCAGUCUCAUCAUCGUGAAAAGUC

Get precursor sequence

Structure

        10          20         30        40        50        60
ACUCGUCGCUUACCCCU--    U     -|  G          A      GC    UGGAU 
                   GCUG CUAGU AAC CGUCAAAAUG CUGUGA  UAUG     U
                   UGAC GGUCG UUG GCAGUUUUAC GACACU  AUAC     U
CUGAAAAGUGCUACUACUC    C     U^  A          C      --    UUCAG 
 .       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

He	Wh

Star sequence

Dya-Mir-2-P2b2_5p*

mirBase accession

None

Sequence

0- GCGUCAAAAUGACUGUGAGCUAUG -24

Get sequence

Mature sequence

Dya-Mir-2-P2b2_3p

mirBase accession

MIMAT0009056

Sequence

38- UAUCACAGCCAUUUUGACGAGUU -61

Get sequence